View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20505_low_7 (Length: 443)
Name: NF20505_low_7
Description: NF20505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20505_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 24 - 283
Target Start/End: Complemental strand, 2669565 - 2669306
Alignment:
| Q |
24 |
agagattacaccattgaaaaaatatagagataagatgaagtagatttggagttttgcagaagtggaacttttcattttgcaatgtttgttcctaaaatca |
123 |
Q |
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| T |
2669565 |
agagattacaccattgaaaaaatatagagataagatgaagtagatttggagttttgaagaagtggaacttttcattttgcaatgtttgttcctaaaatca |
2669466 |
T |
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| Q |
124 |
aaactttttacatatgttacatatttaagataaaattattttgcgttctgtttagggcgtcaataatgtaatgttaagagatgatgtaagttattgactt |
223 |
Q |
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| T |
2669465 |
aaactttttacatatgttacaaatttaagataaaattattttgcgttctgtttagggcgtcaataatgtaatgttaaaagatgatgtaagttattgactt |
2669366 |
T |
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| Q |
224 |
ttttaaattattatttgtacagataagcttacccacattttcgagttgaccgcatacgta |
283 |
Q |
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| T |
2669365 |
ttttaaattattatttgtacagataagcttacccacattttcgagttgaccgcgtacgta |
2669306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 429
Target Start/End: Complemental strand, 2669257 - 2669223
Alignment:
| Q |
395 |
accaatgccttaggactctatttaacattgttctt |
429 |
Q |
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| T |
2669257 |
accaatgccttaggactctatttaacattgttctt |
2669223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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