View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20505_low_9 (Length: 396)
Name: NF20505_low_9
Description: NF20505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20505_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 10 - 378
Target Start/End: Complemental strand, 18362634 - 18362266
Alignment:
| Q |
10 |
ataatactgtaattcaataattaaatttcatatataaacatgatcaaatctacaatcccatgtttaattgttaaactattccagttgtacatgtgcactt |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18362634 |
ataacactgtaattcaataattaaatttcatatataaacatgatcaaatctacaatcccatgtttaattgttaaactattccagttgtacatgtgcactt |
18362535 |
T |
|
| Q |
110 |
tatttaaaccacttaaaaggggaaataatctctttgacttcataaagtatcaccaatggcttactagtatatggtaaaaattatcattagctaaaacatg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18362534 |
tatttaaaccacttaaaaggggaaataatctctttgacttcataaagtatcaccaatggcttactagtatatggtaaaaattatcattagctaaaacatg |
18362435 |
T |
|
| Q |
210 |
agctttagcaagctgccaaagtgctgcttgtgtcccttgctttgatggaagaaaaactctttggatttcaagagctagagatgatcccggcaagctgagt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18362434 |
agctttagcaagctgccaaagtgctgcttgtgtcccttgctttgatggaagaaaaactctttggatttcaagagctagagatgatcccggcaagctgagt |
18362335 |
T |
|
| Q |
310 |
tctatttccagtggcttaagcatgccatcacttcttaagaatagaagtgtccttgatgcataagcagat |
378 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18362334 |
tctattgccagtggcttaagcatgccatcacttcttaagaatagaagtgtccttgatgcataagcagat |
18362266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 10 - 378
Target Start/End: Complemental strand, 3018801 - 3018427
Alignment:
| Q |
10 |
ataatactgtaattcaataattaaatttcatatataaacatgatcaaatctacaatcccatgtttaattgttaaactattccagttgtacatgtgcactt |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
3018801 |
ataacactgtaattcaataattaaatttcatatataaacatgatcaaatctacaatcccatgtttaattgttaagctattcccgttgtacatgtgcactt |
3018702 |
T |
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| Q |
110 |
tatttaaaccacttaaaaggggaaataatctctttgacttcataaag----ta--tcaccaatggcttactagtatatggtaaaaattatcattagctaa |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3018701 |
tatttaaaccacttaaaaggggaaataatctctttgacttcataaagagtttaactcaccaatggcttactagtatatggtaaaaagtatcattagctaa |
3018602 |
T |
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| Q |
204 |
aacatgagctttagcaagctgccaaagtgctgcttgtgtcccttgctttgatggaagaaaaactctttggatttcaagagctagagatgatcccggcaag |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3018601 |
aacatgagctttagcaagctgccaaagtgctgcttgtgtcccttgctttgatggaagaaaaactctttggatttcaagagctagagatgatcccggcaag |
3018502 |
T |
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| Q |
304 |
ctgagttctatttccagtggcttaagcatgccatcacttcttaagaatagaagtgtccttgatgcataagcagat |
378 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3018501 |
ctgagttctattgccagtggcttaagcatgccatcacttcttaagaatagaagtgtccttgatgcataagcagat |
3018427 |
T |
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