View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20506_high_2 (Length: 552)
Name: NF20506_high_2
Description: NF20506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20506_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Original strand, 52472063 - 52472588
Alignment:
| Q |
1 |
gcttgctgctgtttagacagaaactcacccttcttttgttagccaatttaaaaccccatccttcttagtaacaccattcagcaaggtatagaaggaggca |
100 |
Q |
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| T |
52472063 |
gcttgctgctgtttagacagaaactcacccttcttttgttagccaatttaaaaccccatccttcttagtaacaccattcagcaaggtatagaaggaggca |
52472162 |
T |
|
| Q |
101 |
gtctcacccgtcgattgttgcctatgttttgatatgtctctattttcctttatgctgagagcttctcaacatatttttccaattcaccacgacctttccg |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52472163 |
gtctcatccgtcgattgttgcctatgttttgatatgtctctattttcctttatgcttagagcttctcaacatatttttccaattcaccacgacctttccg |
52472262 |
T |
|
| Q |
201 |
atggtctgcaagcaacccactctaaaaataatgtcaattccacttaagtattat---acaaaggcttcaatgtttacctctacctcaccaaacagaatca |
297 |
Q |
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| T |
52472263 |
atggtctgcaagcaacccactctaaaaataatgtcaattccacttaagtattattacacaaaggcttcaatgtttacctctacctcaccaaacagaatca |
52472362 |
T |
|
| Q |
298 |
ccg--ttttttagcgttttccattggttgtgactctatgatcatctccttctttcttctaatagatcaatgtctagtagtagtagatatatcttcttcat |
395 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52472363 |
ccgttttttttagcgttttccattggttgtgactctatgatcatctccttctttcttctaatagatcaatgtc------tagtagatatatcttcttcat |
52472456 |
T |
|
| Q |
396 |
ctttccaactttcccacatatactttccttatattgggcttcctagggcccaaatccaacactttttcctttgtgttctccacttctccacctggcccct |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
52472457 |
ctttccaactttcccacatatactttccttatattgggcttcctagggcccaaatccaacactttttcctttgtg--------ttctccacctggcccct |
52472548 |
T |
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| Q |
496 |
attctgaccctccatttctaacattctaatgactgcattg |
535 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| |
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| T |
52472549 |
attctgaccctccatttctaacattctaatgactacattg |
52472588 |
T |
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