View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20506_high_6 (Length: 371)
Name: NF20506_high_6
Description: NF20506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20506_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 352
Target Start/End: Original strand, 28593284 - 28593626
Alignment:
| Q |
10 |
attattcttcacacaaacatcagcaaccattttactatgctccacttcatcattcaacctcttcaccatcctactcatagtatccaaatcatttatcaat |
109 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28593284 |
attattcttcacacaaacatcagcaaaaattttcctatgctccacttcatcattcaacctcttcaccatcctactcatagtatccaaatcatttatcaat |
28593383 |
T |
|
| Q |
110 |
ataaaaaccccttttgcagcagcatcaagttgttcacatagtctttcacaataagaacttcttcttaacctaattttgattttctttatgaacaaaccaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28593384 |
ataaaaaccccttttgcagcagcatcaagttgttcacatagtctttcacaataagaacttcttcttaacctaattttgattttctttatgaacaaaccaa |
28593483 |
T |
|
| Q |
210 |
ctaaactacctacaatacttggtgcagccactaaccctactacactatgaaaagaaaccactaataaagcaataagaatagcaccatgtgatgtaacaag |
309 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28593484 |
ccaaactacctacaatacttggtgcagccactaaccctactacactatgaaaagaaaccactaataaagcaataagaatggcaccatgtgatgtaacaag |
28593583 |
T |
|
| Q |
310 |
agcaattcctccaactttcttgcaaaccctaatcaatgctaat |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28593584 |
agcaattcctccaactttcttgcaaaccctaatcaatgctaat |
28593626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 352
Target Start/End: Complemental strand, 8358286 - 8357959
Alignment:
| Q |
13 |
attcttcacacaaacatcagcaaccattttactatgctccacttcatcattcaacctcttcaccatcctactcatagtatccaaatcatttatcaatata |
112 |
Q |
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||||||||||||||| | |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8358286 |
attcttcacacaaacttgagcaaccatttttctatgttccacctcatcattcaacctcttcaccatcctactcatagtatccaaatcatttatcaatata |
8358187 |
T |
|
| Q |
113 |
aaaaccccttttgcagcagcatcaagttgttcacatagtctttcacaataagaacttcttcttaacctaattttgattttctttatgaacaaaccaacta |
212 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||| |||| || || ||| |||| ||| ||||||||||||||||||||| |
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| T |
8358186 |
aaaacccctttcgcagcagcatcaagttgttcacatagtctttcgcaattag---------tt---ctattttttattctctttatgaacaaaccaacta |
8358099 |
T |
|
| Q |
213 |
aactacctacaatacttggtgcagccactaaccctactacactatgaaaagaaaccactaataaagcaataagaatagcaccatgtgatgtaacaagagc |
312 |
Q |
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||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8358098 |
aaccacctacaatacttggtgcagccactaacccaacaacactatgaaaagaaaccactaataaagcaataagaatagcagcatgtgatgtaacaagagc |
8357999 |
T |
|
| Q |
313 |
aattcctccaactttcttgcaaaccctaatcaatgctaat |
352 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| |||| |
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| T |
8357998 |
aattcctccaactttcttgcaaacactaatcaatgttaat |
8357959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 53447857 - 53447710
Alignment:
| Q |
13 |
attcttcacacaaacatcagcaaccattttactatgctccacttcatcattcaacctcttcaccatcctactcatagtatccaaatcatttatcaatata |
112 |
Q |
| |
|
|||||||||||||| |||||||||| | ||| ||| || || ||||| |||||||| ||||| | ||||||||||||||||||||||||| |||| |
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| T |
53447857 |
attcttcacacaaatatcagcaacctctctacaatgttcaacctcatccgctaacctcttaaccatacggctcatagtatccaaatcatttatcactata |
53447758 |
T |
|
| Q |
113 |
aaaaccccttttgcagcagcatcaagttgttcacatagtctttcacaa |
160 |
Q |
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||||||||||||||||| |||||| ||||||| ||||| |||||||| |
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| T |
53447757 |
taaaccccttttgcagcaacatcaatttgttcatatagtttttcacaa |
53447710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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