View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20506_high_8 (Length: 254)
Name: NF20506_high_8
Description: NF20506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20506_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 2799307 - 2799540
Alignment:
| Q |
1 |
tatgatggggggaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagtgtg |
100 |
Q |
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| T |
2799307 |
tatgatggggagaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagtgtg |
2799406 |
T |
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| Q |
101 |
tcatcttatgccatgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2799407 |
tcatcttatgccatgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataattt |
2799506 |
T |
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| Q |
201 |
gaatgctgaaattgttgctggaattattgaaaac |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
2799507 |
gaatgctgaaattgttgctggaattattgaaaac |
2799540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 1681421 - 1681188
Alignment:
| Q |
1 |
tatgatggggggaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagtgtg |
100 |
Q |
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| T |
1681421 |
tatgatggggagaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagtgtg |
1681322 |
T |
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| Q |
101 |
tcatcttatgccatgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataattt |
200 |
Q |
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| T |
1681321 |
tcatcttatgccatgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataatat |
1681222 |
T |
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| Q |
201 |
gaatgctgaaattgttgctggaattattgaaaac |
234 |
Q |
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| T |
1681221 |
gaatgctgaaattgttgctggaattattgaaaac |
1681188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 29268494 - 29268716
Alignment:
| Q |
12 |
gaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagtgtgtcatcttatgc |
111 |
Q |
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| T |
29268494 |
gaatgcccagacagattaccctgttactgatttgctgcaaatgatgggtcatgccagccgtcctttagtagacaattctggaaaatgtgtcatcttatgc |
29268593 |
T |
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| Q |
112 |
catgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataatttgaatgctgaaa |
211 |
Q |
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|| |||||| || ||||| ||||| |||||| ||| ||||||||||| |||||||| |||||||||||||| || || || || ||||||||||||| |
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| T |
29268594 |
cacgcacctcgcaaagagtactacaagaagtttctgtatgaagcattcccagttgaaagccatcttcatcacttcttgcacgacaacttgaatgctgaaa |
29268693 |
T |
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| Q |
212 |
ttgttgctggaattattgaaaac |
234 |
Q |
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|||||||||| |||||||||||| |
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|
| T |
29268694 |
ttgttgctgggattattgaaaac |
29268716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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