View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20506_low_3 (Length: 532)
Name: NF20506_low_3
Description: NF20506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20506_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 375
Target Start/End: Complemental strand, 32217392 - 32217032
Alignment:
| Q |
15 |
acctgtgtataaatacctgaaatcacaaaaatgtggaagtttgggatcaagaaggatcaagtggaattttacaaagtttttagttgatgaggaaggccgt |
114 |
Q |
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| T |
32217392 |
acctgtgtataaatacctgaaatcacaaaaatgtggaagtttgggatcaagaaggatcaagtggaattttacaaagtttttagttgatgaggaaggccgt |
32217293 |
T |
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| Q |
115 |
gtcatccaacgttatagtccaaccactcaaccattagccattgaagtactttttctttctctctctgaaattgctttgtatacatatttctttatctatg |
214 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32217292 |
gtcatccaacgttatagtccaaccacccaaccattagccattgaagtactttttctttctctctctgaaattgctttgtatacatatttcattatctatg |
32217193 |
T |
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| Q |
215 |
catatttatatatctttgagaggttaaattaatttgcattttcacatatctttgacagaatgatatcaagaaagcactgagagtggctaattgagagact |
314 |
Q |
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| T |
32217192 |
catatttatatatctttgagaggttaaattattttgcattttcacatatctttgacagaatgatatcaagaaagcactgagagtggctaattgagagact |
32217093 |
T |
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| Q |
315 |
ctacaactatttcagttcaggccattgctggtgtgctgaagatatatcttataatacctcc |
375 |
Q |
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| T |
32217092 |
ctacaactatttcagttcaggccattgctggtgtgctgaagatatatcttataatacctcc |
32217032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 401 - 517
Target Start/End: Complemental strand, 32217003 - 32216887
Alignment:
| Q |
401 |
gtttgtttattgcatatattcatgtctaaaatttaatattgtttggttgtatgaatatgttctttttatgttgaagttcattccagtagggaattgaaat |
500 |
Q |
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| T |
32217003 |
gtttgtttattgcatatattcatgtctaaaatttaatattgtttggttgtatgaatatgttctttttatgttgaagttcattccagtagggaattgaaat |
32216904 |
T |
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| Q |
501 |
ggattcaatttgttttt |
517 |
Q |
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| T |
32216903 |
ggattcaatttgttttt |
32216887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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