View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20506_low_4 (Length: 531)

Name: NF20506_low_4
Description: NF20506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20506_low_4
NF20506_low_4
[»] chr7 (9 HSPs)
chr7 (15-461)||(8572614-8573061)
chr7 (16-198)||(8577314-8577496)
chr7 (22-189)||(8546706-8546873)
chr7 (16-184)||(8582688-8582856)
chr7 (16-183)||(8538829-8538996)
chr7 (69-155)||(8560773-8560859)
chr7 (36-155)||(17261437-17261556)
chr7 (34-80)||(8602777-8602823)
chr7 (37-175)||(8610710-8610848)
[»] chr8 (1 HSPs)
chr8 (16-183)||(12529893-12530060)
[»] chr2 (5 HSPs)
chr2 (37-152)||(14705509-14705624)
chr2 (34-174)||(12257833-12257973)
chr2 (37-163)||(7543323-7543449)
chr2 (37-152)||(12244344-12244459)
chr2 (37-86)||(16656607-16656656)
[»] chr1 (2 HSPs)
chr1 (106-152)||(34465189-34465235)
chr1 (491-531)||(44662504-44662544)


Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 15 - 461
Target Start/End: Original strand, 8572614 - 8573061
Alignment:
Q  15 gatcaatctttgagaatttgtaaaagcaacacaagagggagttgttctgtttccttgatcattgtgtatgatttccacacgatcattttgctcctgccat 114  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||     
T  8572614 gatcaatctttgagaattagtaaaagcaacacaagagggagttgttctgtttccttggtcattgtgtatgatttcaacacgatcattttgctcctgccac 8572713  T
Q  115 actccaacacatgagtaagtcgtgccaaggtcaattccaatcgcaactccctcatatttttctgccattatgcttgattcaagtcaaagaaacagtgaat 214  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8572714 actccaacacatgagtaagtcgtgccaaggtcaattccgatcgcaactccctcatatttttctgtcattatgcttgattcaagtcaaagaaacagtgaat 8572813  T
Q  215 tcaaacttggaaaaggaataacagctcagtgtgctgtccgttcacgttagatgcgtatggaaattgggtaaaactggagtcgaaattgtgaactgtaact 314  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8572814 tcaaacttggaaaaggaataacagctcagtgtgctgtccgttgacgttagatgcgtatggaaattgggtaaaactggagtcgaaattgtgaactgtaact 8572913  T
Q  315 agggagggaatcgtgatcaaggtggaaatagggcaagtaggccaaacttgtcagacttagacctagctaggacaaactctttctttatatagaagtttgg 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8572914 agggagggaatcgtgatcaaggtggaaatagggcaagtaggccaaacttgtcagacttagacctagctaggtcaaactctttctttatatagaagtttgg 8573013  T
Q  415 gc-tttttttagactatttaattaaaaaaagttaggtttatgtcatac 461  Q
    || |||||||||||||||||||||||||||||||||||||||||||||    
T  8573014 gcttttttttagactatttaattaaaaaaagttaggtttatgtcatac 8573061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 8577314 - 8577496
Alignment:
Q  16 atcaatctttgagaatttgtaaaagcaacacaagagggagttgttctgtttccttgatcattgtgtatgatttccacacgatcattttgctcctgccata 115  Q
    ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||| ||||| || |||||||    
T  8577314 atcaatctttgagaattggtaaaagcaacacaagaaggagtggttctgtttccttgatcattgtgtataatttctacacgatcgttttgttcatgccata 8577413  T
Q  116 ctccaacacatgagtaagtcgtgccaaggtcaattccaatcgcaactccctcatatttttctgccattatgcttgattcaagt 198  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||  ||||| |||||||    
T  8577414 ctccaacacatgagtaagtcgtgccaaggtcaattccaatggcaactccctcgtatttttcttccattgagcttgcttcaagt 8577496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 8546706 - 8546873
Alignment:
Q  22 ctttgagaatttgtaaaagcaacacaagagggagttgttctgtttccttgatcattgtgtatgatttccacacgatcattttgctcctgccatactccaa 121  Q
    ||||| |||||||| |||||||||||||| || |||||| ||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||    
T  8546706 ctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacgatcgttctgctcctgccatactccaa 8546805  T
Q  122 cacatgagtaagtcgtgccaaggtcaattccaatcgcaactccctcatatttttctgccattatgctt 189  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||    
T  8546806 cacatgagtaagtcgtgccaaggtcaattccgatcgcaactccctcatatttttttgccattgtgctt 8546873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 8582688 - 8582856
Alignment:
Q  16 atcaatctttgagaatttgtaaaagcaacacaagagggagttgttctgtttccttgatcattgtgtatgatttccacacgatcattttgctcctgccata 115  Q
    ||||||||||||||||| ||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  8582688 atcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgtatgatttccacacgatcgttttgctcctgccaca 8582787  T
Q  116 ctccaacacatgagtaagtcgtgccaaggtcaattccaatcgcaactccctcatatttttctgccatta 184  Q
    |||||||||||||||| || || |||||||||||||| || |||| ||||| |||||||||| ||||||    
T  8582788 ctccaacacatgagtaggttgtaccaaggtcaattccgattgcaaatcccttatatttttcttccatta 8582856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 8538829 - 8538996
Alignment:
Q  16 atcaatctttgagaatttgtaaaagcaacacaagagggagttgttctgtttccttgatcattgtgtatgatttccacacgatcattttgctcctgccata 115  Q
    ||||||| |||||||||  ||||| |||||||||| || || ||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |    
T  8538829 atcaatcgttgagaattactaaaaccaacacaagaaggtgtggttttgtttccttgatcgttgtgtatgatctccacacgatcgttttgctcctgccaca 8538928  T
Q  116 ctccaacacatgagtaagtcgtgccaaggtcaattccaatcgcaactccctcatatttttctgccatt 183  Q
    |||||||||||||||| |||||||||||||||||||| || ||| ||||||||||||||| |||||||    
T  8538929 ctccaacacatgagtaggtcgtgccaaggtcaattccgatagcagctccctcatatttttttgccatt 8538996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 8560773 - 8560859
Alignment:
Q  69 ttgatcattgtgtatgatttccacacgatcattttgctcctgccatactccaacacatgagtaagtcgtgccaaggtcaattccaat 155  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| || || |||||||||||||||||    
T  8560773 ttgatcattgtgtatgatttccacacgattgttttgctcctgccatactccaacacatgagtaggttgttccaaggtcaattccaat 8560859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 17261437 - 17261556
Alignment:
Q  36 aaaagcaacacaagagggagttgttctgtttccttgatcattgtgtatgatttccacacgatcattttgctcctgccatactccaacacatgagtaagtc 135  Q
    |||||||||| |||| |||||  || ||||||||||||||||||| ||||| || || | | ||| ||  || ||||||||  ||||||| ||||| |||    
T  17261437 aaaagcaacaaaagaaggagtaattttgtttccttgatcattgtgaatgatctcaactctaccatgttcttcatgccatacggcaacacaagagtatgtc 17261536  T
Q  136 gtgccaaggtcaattccaat 155  Q
    || |||||||| ||||||||    
T  17261537 gtcccaaggtctattccaat 17261556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 8602777 - 8602823
Alignment:
Q  34 gtaaaagcaacacaagagggagttgttctgtttccttgatcattgtg 80  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||||    
T  8602777 gtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtg 8602823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 8610710 - 8610848
Alignment:
Q  37 aaagcaacacaagagggagttgttctgtttccttgatcattgtgtatgatttccacacgatcattttgctcctgccatactccaacacatgagtaagtcg 136  Q
    ||||||||| |||| ||||| |||||||||||||| ||||| || || || ||  | |  |  ||||| |||||||||||  |||||||||| || || |    
T  8610710 aaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttg 8610809  T
Q  137 tgccaaggtcaattccaatcgcaactccctcatattttt 175  Q
    | ||||| ||||||||||| |||  ||||||||||||||    
T  8610810 ttccaagatcaattccaatagcaggtccctcatattttt 8610848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 12529893 - 12530060
Alignment:
Q  16 atcaatctttgagaatttgtaaaagcaacacaagagggagttgttctgtttccttgatcattgtgtatgatttccacacgatcattttgctcctgccata 115  Q
    |||||||| |||||||| ||||||||||||||||| || |||||| ||||||||||||||||||| || ||||||||||||||| ||||||| |||||||    
T  12529893 atcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaattatttccacacgatcagtttgctcttgccata 12529992  T
Q  116 ctccaacacatgagtaagtcgtgccaaggtcaattccaatcgcaactccctcatatttttctgccatt 183  Q
    ||||||||||||||||||| |||||||| |||||||| || |||||||| ||||| |||| |||||||    
T  12529993 ctccaacacatgagtaagttgtgccaagatcaattcctatagcaactccttcatacttttttgccatt 12530060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 14705509 - 14705624
Alignment:
Q  37 aaagcaacacaagagggagttgttctgtttccttgatcattgtgtatgatttccacacgatcattttgctcctgccatactccaacacatgagtaagtcg 136  Q
    ||||||||| |||| ||||||||||| || |||||||| ||||| |||||||| || |||| || ||| |||||||||||| ||||||||||||| || |    
T  14705509 aaagcaacaaaagaaggagttgttctattgccttgatcgttgtgaatgatttcaactcgataatgttgttcctgccatactgcaacacatgagtacgttg 14705608  T
Q  137 tgccaaggtcaattcc 152  Q
    | |||||||| |||||    
T  14705609 taccaaggtctattcc 14705624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 34 - 174
Target Start/End: Complemental strand, 12257973 - 12257833
Alignment:
Q  34 gtaaaagcaacacaagagggagttgttctgtttccttgatcattgtgtatgatttccacacgatcattttgctcctgccatactccaacacatgagtaag 133  Q
    ||||||||||||||||| || |||||||||||||||||||| ||||| ||||| ||  | |||  || ||| |||||||| ||  |||| ||||| || |    
T  12257973 gtaaaagcaacacaagaaggcgttgttctgtttccttgatcgttgtgaatgatctcagctcgacaatattgttcctgccaaacagcaacgcatgaatacg 12257874  T
Q  134 tcgtgccaaggtcaattccaatcgcaactccctcatatttt 174  Q
    | ||||||||||||||||| ||||||| ||| || ||||||    
T  12257873 ttgtgccaaggtcaattcctatcgcaagtccttcgtatttt 12257833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 163
Target Start/End: Original strand, 7543323 - 7543449
Alignment:
Q  37 aaagcaacacaagagggagttgttctgtttccttgatcattgtgtatgatttccacacgatcattttgctcctgccatactccaacacatgagtaagtcg 136  Q
    ||||||||| |||| || ||||||||||| ||||| || ||||| |||||||| || ||||  | ||| |||||||||||| ||||||| ||||| || |    
T  7543323 aaagcaacaaaagaaggtgttgttctgttgccttggtcgttgtgaatgatttcaactcgatagtgttgatcctgccatactgcaacacaagagtacgttg 7543422  T
Q  137 tgccaaggtcaattccaatcgcaactc 163  Q
    |||||||||| ||||| || |||||||    
T  7543423 tgccaaggtctattcctattgcaactc 7543449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 37 - 152
Target Start/End: Complemental strand, 12244459 - 12244344
Alignment:
Q  37 aaagcaacacaagagggagttgttctgtttccttgatcattgtgtatgatttccacacgatcattttgctcctgccatactccaacacatgagtaagtcg 136  Q
    |||||||||||||| || ||||||||||| || ||||| ||||| |||||||| ||||||   | ||| |||||||||||| |||||||||| || || |    
T  12244459 aaagcaacacaagaaggtgttgttctgttgccctgatcgttgtgaatgatttcaacacgagagtgttgttcctgccatactgcaacacatgaatacgttg 12244360  T
Q  137 tgccaaggtcaattcc 152  Q
    | |||||||| |||||    
T  12244359 taccaaggtctattcc 12244344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 16656656 - 16656607
Alignment:
Q  37 aaagcaacacaagagggagttgttctgtttccttgatcattgtgtatgat 86  Q
    ||||||||| |||| || |||||||||||||| || ||||||||||||||    
T  16656656 aaagcaacaaaagaaggtgttgttctgtttccctggtcattgtgtatgat 16656607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 34465235 - 34465189
Alignment:
Q  106 tcctgccatactccaacacatgagtaagtcgtgccaaggtcaattcc 152  Q
    |||||||||||| ||||||||||||| || ||||||||||| |||||    
T  34465235 tcctgccatactgcaacacatgagtaggttgtgccaaggtctattcc 34465189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 491 - 531
Target Start/End: Complemental strand, 44662544 - 44662504
Alignment:
Q  491 ccaaaaaattccttttatacaattaattcaatctcttattg 531  Q
    ||||||||| |||| || |||||||||||||||||||||||    
T  44662544 ccaaaaaataccttgtagacaattaattcaatctcttattg 44662504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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