View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20506_low_5 (Length: 438)
Name: NF20506_low_5
Description: NF20506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20506_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Complemental strand, 293874 - 293476
Alignment:
| Q |
17 |
cactattcatgtgacttaaaggtttggattaactacaacaacctagactacatgagatgagatgaaatccatccttaaatatgagtgttacttttatgtt |
116 |
Q |
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| T |
293874 |
cactattcatgtgacttaaaggtttggattaactacaacaacctagactacatgagatgagatgaaattcatccttaaatatgagtgttacttttatgtt |
293775 |
T |
|
| Q |
117 |
ttaaaagcaaagcatttatttataattcttgttcagcctcttgagacagcaaggcccattattcttttttatttctttaagtttgcttcatctgacaagg |
216 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
293774 |
ttaaaagcaaagcatttatttaaaattcttgttctgcctcttgagacagcaaggcccattattcttttttatttctttaagtttgcttcatctgacaagg |
293675 |
T |
|
| Q |
217 |
tatgtattgtattgtatagtattcattaagttaagcatcagttgagttgaggatcataaacataactagaaaagcaatacaattattcattctcatcata |
316 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
293674 |
tatgtatt-----gtatagtattcattaagttaagcatcagttgagttgaggatcataaacataactagaaaagcaatacaattaattattctcatcata |
293580 |
T |
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| Q |
317 |
cacctttgtctttacannnnnnnnnnattggttataaagcttagctaactgtggttagtatcatgtctgtgtgaagcatttaagaaattggaaaaccaca |
416 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
293579 |
cacctttgtctttacattttttttttattggttataaagcttagctaactgtggttagtatcatgtctgtgtgaagcatttaagaaattggaaaaccaca |
293480 |
T |
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