View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20506_low_6 (Length: 437)
Name: NF20506_low_6
Description: NF20506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20506_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 9 - 419
Target Start/End: Original strand, 27566194 - 27566603
Alignment:
| Q |
9 |
gattattctctggtagcattgcaaatcagaggtcaatgaacagaatggatgatactaagaagagaaattattggttacttttgaaaaaataactagctaa |
108 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27566194 |
gattattttctggtagcattgcaaatcgaaggtcaatgaaccgaatggatgataccaagaagagaaattattggttacttttgaaaaaataactagctaa |
27566293 |
T |
|
| Q |
109 |
ttgcatgatgctcaaatca--gagtaataacccctcaaaaataaaatcacagagtaatagattaatttatcattggttgattgtctgnnnnnnnnnnnnn |
206 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27566294 |
ttgcatgatgctcaaatcacagagtaataacccctcaaaaataaaatcacagagtaatagattaatttatcattggttgattgtctgaaaaaaaaaaaaa |
27566393 |
T |
|
| Q |
207 |
nngaaagggttagacaagaatttgaatcgttcaagagttacattatgccgcaggagaagcaggttgcactaggaagttctttctattagaaattatatga |
306 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27566394 |
ggg---gggttagacaagaatttgaatcgttcaagagttacattatgccgcaggagaagcaggttgcactaggaagttctttctattagaaattatatga |
27566490 |
T |
|
| Q |
307 |
atagtgtgaatcagtttcgtttaggcagcaaagttcaaatgcttctgcaatttatttatttggacagatatagagattatgaatatgtggatatcatatg |
406 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27566491 |
agagtgtgaatcagtttcgtttaggcagcaaagttcaaatgcttctgcaatttatttatttggacagatatagagattatgaatatgtggatatgatatg |
27566590 |
T |
|
| Q |
407 |
gtatatataggcc |
419 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27566591 |
gtatatataggcc |
27566603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University