View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20507_high_10 (Length: 250)
Name: NF20507_high_10
Description: NF20507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20507_high_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 29208473 - 29208709
Alignment:
| Q |
14 |
gaagattgtaaaccgttcttgacaaacttttggccatggaaaattaaggaaattgcaaaagaaagtgaaacaattaggacatagtattaattaactaaga |
113 |
Q |
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| T |
29208473 |
gaagattgtgaaccgttcttgacaaacttttggccatggaaaattaaggaaaatgcaaaagaaagtgaaacaattaggacatagtattaattaactaaga |
29208572 |
T |
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| Q |
114 |
ggaagtagaacaaaactacattataaaaaattaatcactagtccaaccttcaaagtagatttagtgtttgctctctccatgtttaagtggaataaatgtg |
213 |
Q |
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| T |
29208573 |
ggaagtagaacaaaactacattataaaaaattaatcactagtccaaccttcaaagtagatttagtgtttgctctctccatgtttaagtggaataaatgtg |
29208672 |
T |
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| Q |
214 |
taactatgtaaccgttgttgaattgagggggctatat |
250 |
Q |
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| T |
29208673 |
taactatgtaaccgttgttgaattgagggggctatat |
29208709 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 38377782 - 38377716
Alignment:
| Q |
155 |
tccaaccttcaaagtagatttagtgtttgctctctccatgtttaagtggaataaatgtgtaactatg |
221 |
Q |
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| T |
38377782 |
tccaaccttcaaaacagattcagtgtttggtctctccatgtttaagtggacttgatgtgtaactatg |
38377716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 38378178 - 38378088
Alignment:
| Q |
28 |
gttcttgacaaacttttggccatggaaaattaaggaaattgcaaa--agaaagtgaaacaattaggacatagtattaattaactaagaggaa |
117 |
Q |
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| T |
38378178 |
gttcttgacaaacttttcaccgcagaaaattaaggaaaatgcaaagtagaatg-gaaacaattaggaattagtattaattaaccaagaggaa |
38378088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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