View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20507_high_9 (Length: 267)

Name: NF20507_high_9
Description: NF20507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20507_high_9
NF20507_high_9
[»] chr8 (12 HSPs)
chr8 (1-251)||(45216744-45216993)
chr8 (16-251)||(28876089-28876323)
chr8 (1-251)||(4246274-4246523)
chr8 (1-251)||(34900893-34901142)
chr8 (1-224)||(5539767-5539990)
chr8 (1-224)||(43771243-43771465)
chr8 (57-224)||(12580085-12580252)
chr8 (56-251)||(36483825-36484019)
chr8 (56-224)||(37668970-37669138)
chr8 (58-224)||(2872535-2872701)
chr8 (1-38)||(36483777-36483814)
chr8 (1-38)||(37668922-37668959)
[»] chr3 (9 HSPs)
chr3 (1-251)||(52505345-52505594)
chr3 (1-224)||(42464481-42464704)
chr3 (1-251)||(10224673-10224922)
chr3 (1-208)||(28705084-28705291)
chr3 (1-251)||(48123172-48123420)
chr3 (1-251)||(1679203-1679469)
chr3 (56-224)||(45532610-45532778)
chr3 (46-224)||(25936626-25936804)
chr3 (78-185)||(50523019-50523127)
[»] chr5 (7 HSPs)
chr5 (1-224)||(12852457-12852680)
chr5 (1-251)||(30918699-30918948)
chr5 (1-251)||(9792643-9792892)
chr5 (1-251)||(26794515-26794764)
chr5 (1-224)||(33830108-33830331)
chr5 (56-224)||(32707449-32707617)
chr5 (56-224)||(1639337-1639505)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-255)||(44124-44377)
[»] chr6 (3 HSPs)
chr6 (1-251)||(7188302-7188551)
chr6 (1-251)||(1036338-1036587)
chr6 (56-251)||(8357283-8357476)
[»] chr4 (10 HSPs)
chr4 (1-255)||(14795354-14795607)
chr4 (1-251)||(8063619-8063868)
chr4 (5-251)||(31226689-31226934)
chr4 (1-251)||(3403096-3403345)
chr4 (1-224)||(52572537-52572760)
chr4 (1-251)||(53322687-53322936)
chr4 (56-224)||(52122487-52122655)
chr4 (56-251)||(41146008-41146201)
chr4 (1-135)||(5325340-5325484)
chr4 (78-185)||(54433545-54433652)
[»] chr7 (9 HSPs)
chr7 (1-251)||(40096004-40096253)
chr7 (1-251)||(39521117-39521366)
chr7 (1-212)||(36660813-36661024)
chr7 (56-251)||(27397639-27397833)
chr7 (56-251)||(11830090-11830284)
chr7 (56-177)||(38265099-38265220)
chr7 (78-185)||(25557619-25557726)
chr7 (1-38)||(11830042-11830079)
chr7 (45-77)||(28915200-28915232)
[»] chr2 (8 HSPs)
chr2 (1-251)||(22484614-22484863)
chr2 (1-251)||(40308360-40308609)
chr2 (1-224)||(6124534-6124756)
chr2 (56-267)||(4170028-4170238)
chr2 (56-224)||(38601938-38602106)
chr2 (56-251)||(6497194-6497388)
chr2 (56-179)||(33325155-33325278)
chr2 (1-38)||(6497399-6497436)
[»] chr1 (11 HSPs)
chr1 (1-251)||(6916386-6916635)
chr1 (1-251)||(38330784-38331033)
chr1 (1-212)||(52895263-52895474)
chr1 (1-251)||(8132517-8132766)
chr1 (1-224)||(3427207-3427429)
chr1 (16-251)||(28658830-28659064)
chr1 (56-267)||(5984579-5984787)
chr1 (56-251)||(30324111-30324305)
chr1 (56-224)||(1043564-1043732)
chr1 (56-224)||(25257008-25257176)
chr1 (1-38)||(5984531-5984568)
[»] scaffold0060 (1 HSPs)
scaffold0060 (5-251)||(29959-30204)
[»] scaffold0640 (1 HSPs)
scaffold0640 (56-224)||(7705-7873)
[»] scaffold0037 (2 HSPs)
scaffold0037 (56-251)||(27308-27502)
scaffold0037 (1-38)||(27513-27550)
[»] scaffold0112 (1 HSPs)
scaffold0112 (56-251)||(41606-41800)
[»] scaffold0177 (1 HSPs)
scaffold0177 (56-220)||(25172-25336)


Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 45216993 - 45216744
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45216993 cttccaaagtggtcaccgtccactttggccaccgtcgaaccatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 45216894  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  45216893 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggattcaaaaagggtagaagatttggtttatgtgcatattaatcttcgacta 45216794  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    ||||||||||||||||||||||||       ||||||||||||||||||||    
T  45216793 ttgtcaaggaaataagatggatat-aagaaaggacaatcaagaatgtggga 45216744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 28876323 - 28876089
Alignment:
Q  16 ccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtacttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28876323 ccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtacttt 28876224  T
Q  116 ctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataa 215  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||    
T  28876223 ctcttttatccattctttgaaaagaaacaaaatggatccaaaaagggtagaagatttggtttatgtgcatactaatcttcgactattgtcaaggaaagaa 28876124  T
Q  216 gatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||       ||||||||||||||||||||    
T  28876123 gatggatat-aaaaaaggacaatcaagaatgtggga 28876089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 4246274 - 4246523
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4246274 cttccaaagtggtcgccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcctgtgcaaccttgttcttcctcctgttgtgagag 4246373  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4246374 aaatttgagtactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaagggtagaagatttggtttatgtgcatattaatcttcgacta 4246473  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| ||  |||||||       ||||||||||||||||||||    
T  4246474 ttgtcaaggaaagaatgtggatat-aagaaaggacaatcaagaatgtggga 4246523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 34901142 - 34900893
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34901142 cttccaaagtggtcgccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcctgtgcaaccttgttcttcctcctgttgtgagag 34901043  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34901042 aaatttgagtactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaagggtagaagatttggtttatgtgcatattaatcttcgacta 34900943  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| ||  |||||||       ||||||||||||||||||||    
T  34900942 ttgtcaaggaaagaatgtggatat-aagaaaggacaatcaagaatgtggga 34900893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5539767 - 5539990
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||     
T  5539767 cttccaaagtggtcaccgtccactttggccaccgtcgaactatccaaaagcttactttaaagcttcttgtgcaaccttgttcttccttctgttgtgagat 5539866  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  5539867 aaatttgagtactttctcttttatctattctttgaaaagaaacaaaatggatccaaaaagggtagaagatttggtttatgtgcatactaatcttcgacta 5539966  T
Q  201 ttgtcaaggaaataagatggatat 224  Q
    |||||||||||| |||||||||||    
T  5539967 ttgtcaaggaaagaagatggatat 5539990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 43771465 - 43771243
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43771465 cttccaaagtggtcgctgtccactttggccaccgtcaaactatccaaaagcttgctttaaagcttcttgtgtaaccttgttcttcctcctgttgtgagag 43771366  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||    
T  43771365 aaatttgagtactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaagggtagaaaatttgg-ttatgtgcatactaatcttcgacta 43771267  T
Q  201 ttgtcaaggaaataagatggatat 224  Q
    |||||||||||| |||||||||||    
T  43771266 ttgtcaaggaaagaagatggatat 43771243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 12580252 - 12580085
Alignment:
Q  57 ttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaa 156  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  12580252 ttaaagcttcttgtgcaaccttgttcttcctcatgttgtgagagaaattggtgtactttctcttttatccattctttgaaaagaaacaaaatggatccaa 12580153  T
Q  157 aaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatat 224  Q
    ||||||||||| ||||||||| |||||||| |||||||||||| |||||||||||| |||||||||||    
T  12580152 aaagggtagaagatttggtttttgtgcatactaatcttcgactcttgtcaaggaaagaagatggatat 12580085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 56 - 251
Target Start/End: Original strand, 36483825 - 36484019
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||  |||| ||||||||||||||||    
T  36483825 tttaaagcttcttgtgcaaccttgttcttcctcatgttgtgagagaaattggagtactttttcttttatccattctttgaaaataaacaaaatggatcca 36483924  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||| |||||||||||       ||||||||||||||||||||    
T  36483925 aaaagggtagaagatttggtttatgtgcatactaatcttcaactcttgtcaaggaaagaagatggatat-aagaaaggacaatcaagaatgtggga 36484019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 37668970 - 37669138
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||    
T  37668970 tttaaagcttcttgtgcaaccttgttcttcctcatgttgtgagagaaattggagtactttttcttttatccattctttgaaaagaaacaaaatggatcca 37669069  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatat 224  Q
    |||| ||||||| |||||||||||||||||| |||||||| ||| |||||||||||| |||||||||||    
T  37669070 aaaaaggtagaagatttggtttatgtgcatactaatcttcaactcttgtcaaggaaagaagatggatat 37669138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 2872701 - 2872535
Alignment:
Q  58 taaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaa 157  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||  ||||||||||||||||||| |||    
T  2872701 taaagcttcttgtgcaaccttgttcttcctcatgttgtgagagaaattggggtactttctcttttatccattctttgaaaagaaacaaaatggatcgaaa 2872602  T
Q  158 aagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatat 224  Q
    |||||||||| |||||||||||||||||| |||||||||| | |||||||||||| |||||||||||    
T  2872601 aagggtagaagatttggtttatgtgcatactaatcttcgaatcttgtcaaggaaagaagatggatat 2872535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 36483777 - 36483814
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcga 38  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  36483777 cttccaaagtggtcgccgtccactttggccaccgtcga 36483814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37668922 - 37668959
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcga 38  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  37668922 cttccaaagtggtcgccgtccactttggccaccgtcga 37668959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 52505594 - 52505345
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  52505594 cttccaaagtggtcaccgtccactttggccaccgtcgaaccatccaaaagcttgctttaaagcttcttgtgcaacattgttcttcctcctgttgtgagag 52505495  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  52505494 aaatttgagtactttctcttttatccatacttgaaaaagaaacaaaatggatccaaaaagggtagaagatttggtttatgtgcatattaatcttcgacta 52505395  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    ||||||||||||||||||||||||       ||||||||||||||||||||    
T  52505394 ttgtcaaggaaataagatggatat-aagaaaggacaatcaagaatgtggga 52505345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42464704 - 42464481
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    ||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42464704 cttcctaagtggtcgccgtccactttggccaccgtcgaactatccaaaagtttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 42464605  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  42464604 aaatttgagtactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaagggtagaagatttggtttatgtgcatactaatcttcgacta 42464505  T
Q  201 ttgtcaaggaaataagatggatat 224  Q
    |||||||||||| |||||||||||    
T  42464504 ttgtcaaggaaagaagatggatat 42464481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 10224922 - 10224673
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10224922 cttccaaagtggtcgccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtaagag 10224823  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||| ||||||||||||||||||||||  |||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  10224822 aaatttgagcactttctcttttatccattctttgaaaagaaataaaatggatccaaaaagggtagaagatttggtttatgtgcatactaatcttcgacta 10224723  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| |||||||||||       ||||||||||||||||||||    
T  10224722 ttgtcaaggaaagaagatggatat-atgaaaggacaatcaagaatgtggga 10224673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 28705084 - 28705291
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28705084 cttccaaagtggtcgccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcctgtgcaaccttgttcttcctcctgttgtgagag 28705183  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||     
T  28705184 aaatttgagtactttctcttttatccattcttttaaaagaaacaaaatggatccaaaaagggtagaagattttgtttatgtgcatattaatcttcgactt 28705283  T
Q  201 ttgtcaag 208  Q
    ||||||||    
T  28705284 ttgtcaag 28705291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 48123172 - 48123420
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48123172 cttccaaagtggtcgccgtccactttggccaccgtcgaactatctaaaagcttgctttaaagcttcttgtgcaaccttgttcttcatcctgttgtgagag 48123271  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcc-aaaaagggtagaatatttggtttatgtgcatattaatcttcgact 199  Q
    ||||||||||||||||||||||||||||||||  |||  ||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||    
T  48123272 aaatttgagtactttctcttttatccattctttgaaa--aaacaaaatggatccaaaaaagggtagaagatttggtttatgtgcatactaatcttcgact 48123369  T
Q  200 attgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    ||||||||||||| |||||||||||       ||||||||||||||||||||    
T  48123370 attgtcaaggaaagaagatggatat-aagaaaggacaatcaagaatgtggga 48123420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 1679469 - 1679203
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttc-----------------ttgtgcaaccttgttct 83  Q
    ||||||||||  || ||||||||||||||||||||||||||||||||||| |||||||||||||||                 |||||||||||| ||||    
T  1679469 cttccaaagtgatcgccgtccactttggccaccgtcgaactatccaaaagtttgctttaaagcttccagtgcaaccttgttctttgtgcaacctttttct 1679370  T
Q  84 tcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgc 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1679369 tcctcctgttgtgagagaaatttgagtactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaagggtagaagatttggtttatgtgc 1679270  T
Q  184 atattaatcttcgactattgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    ||||||||||||||||||||||||||||| ||  |||||||       ||||||||||||||||||||    
T  1679269 atattaatcttcgactattgtcaaggaaagaatgtggatat-aagaaaggacaatcaagaatgtggga 1679203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 45532778 - 45532610
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||  |||||||||||||||||||||    
T  45532778 tttaaagcttcttgtgcaaccttgttcttcctcatgttgtgagagaaattggggtactttctcttttatccattctttgaaaagaaacaaaatggatcca 45532679  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatat 224  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||||||| |||||||||||    
T  45532678 aaaagggtagaagatttggtttatgtgcatactaatctttgactcttgtcaaggaaagaagatggatat 45532610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 25936804 - 25936626
Alignment:
Q  46 aaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaa 145  Q
    ||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||  |||||||||||    
T  25936804 aaaagcttgttttacagcttcttgtgcaaccttgttcttcctccggttgtgagagaaattagggtactttctcttttatccattctttgaaaagaaacaa 25936705  T
Q  146 aatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatat 224  Q
    |||||||||||||||  ||||| |||||||||||||| ||| |||||||||||| |||||||||||| |||||| ||||    
T  25936704 aatggatccaaaaagaatagaagatttggtttatgtggatactaatcttcgactcttgtcaaggaaagaagatgaatat 25936626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 50523127 - 50523019
Alignment:
Q  78 tgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaa-gggtagaatatttggtt 176  Q
    |||||||| || |||| ||| | ||||| |||||||| ||||||||| |||| ||  |||||||| |||||||||||||||| |||| ||| ||||||||    
T  50523127 tgttcttcatcatgttttgaaaaaaattggagtacttactcttttattcattatttcaaaagaaataaaatggatccaaaaaggggttgaagatttggtt 50523028  T
Q  177 tatgtgcat 185  Q
    |||| ||||    
T  50523027 tatgcgcat 50523019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 12852457 - 12852680
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12852457 cttccaaagtggtcgccgtccactttggccaccgtcaaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 12852556  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12852557 aaatttgagtactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaagggtagaagatttggtttatgtgcatattaatcttcgacta 12852656  T
Q  201 ttgtcaaggaaataagatggatat 224  Q
    |||||||||||| |||||||||||    
T  12852657 ttgtcaaggaaagaagatggatat 12852680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 30918699 - 30918948
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    ||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30918699 cttcctaagtggtcgccgtccactttggccaccgtcgaactatccaaaagtttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 30918798  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  30918799 aaatttgagtactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaagggtagaagatttggtttatgtgcatactaatcttcgacta 30918898  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| |||||||||||       ||||||||||||||||||||    
T  30918899 ttgtcaaggaaagaagatggatat-aagaaaggacaatcaagaatgtggga 30918948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 9792643 - 9792892
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  9792643 cttccaaagtggtcgccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcctgtacaaccttgttcttcctcctgttgtgagag 9792742  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9792743 aaatttgagtactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaagggtagaagatttggtttatgtgcatattaatcttcgacta 9792842  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| ||  |||||||       ||||||||||||||||||||    
T  9792843 ttgtcaaggaaagaatgtggatat-aagaaaggacaatcaagaatgtggga 9792892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 26794764 - 26794515
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26794764 cttccaaagtggtcgccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtaagag 26794665  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||| ||||||||||||||||||||||  |||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  26794664 aaatttgagcactttctcttttatccattctttgaaaagaaataaaatggatccaaaaagggtagaagatttggtttatgtgcatactaatcttcgacta 26794565  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| |||||||||||       ||||||||||||||||||||    
T  26794564 ttgtcaaggaaagaagatggatat-atgaaaggacaatcaagaatgtggga 26794515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 33830108 - 33830331
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  33830108 cttccaaagtggtcgccgtccactttggccaccgtcgaactatcgaaaagctagctttaaagcttcttgtgcaaccttcttcttcctcctgttgtgagag 33830207  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||  ||||||||||||||||| |||||||||||||    
T  33830208 aaatttgagtactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaagggtaaaagctttggtttatgtgcatactaatcttcgacta 33830307  T
Q  201 ttgtcaaggaaataagatggatat 224  Q
    |||||||||||| |||||||||||    
T  33830308 ttgtcaaggaaagaagatggatat 33830331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 32707617 - 32707449
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||  |||||||||||||||||||||    
T  32707617 tttaaagcttcttgtgcaaccttgttcttcctcatgttgtgagagaaattggggtactttctcttttatccattctttgaaaagaaacaaaatggatcca 32707518  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatat 224  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  32707517 aaaagggtagaagatttggtttatgtgcatattaatcttcgactcttgtcaaggaaagaagatggatat 32707449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 1639505 - 1639337
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||  |||||||||||||||||||||    
T  1639505 tttaaagcttcttgtgcaaccttgttcttcctcatgttgtgagagaaattggagtactttctattttatccattctttgaaaagaaacaaaatggatcca 1639406  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatat 224  Q
    |||||||||||| ||||||||||||||| || |||||||||||| |||| ||||||| || ||||||||    
T  1639405 aaaagggtagaagatttggtttatgtgcgtactaatcttcgactcttgtgaaggaaagaatatggatat 1639337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 44377 - 44124
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| |||| ||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44377 cttccaaagtggtcatcgtccactttggccaccatcgaactatccataaacttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 44278  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44277 aaatttgagtactttctcttttatccagtctttaaaaagaaacaaaatggatccaaaaagggtagaaaatttggtttatgtgcatattaatcttcgacta 44178  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtgggatatt 255  Q
    |||||||||||| |||||||||||       ||||||||||||||||||||||||    
T  44177 ttgtcaaggaaagaagatggatat-aagaaaggacaatcaagaatgtgggatatt 44124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 7188551 - 7188302
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||||||  ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7188551 cttccaaagtggtcaccaaccactttggccaccgtcgaacaatccaaaagcttgcattaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 7188452  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7188451 aaatttgagtactttctcttttatccattctttaaaaagaaacaaaatggatccaaaaagggtagaagatttggtttatgtgcatattaatcttcgacta 7188352  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| |||||||||||       ||||||||||||||||||||    
T  7188351 ttgtcaaggaaagaagatggatat-aagaaaggacaatcaagaatgtggga 7188302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 1036587 - 1036338
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1036587 cttccaaagtggtcgccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcctgtgcaaccttgttcttcctcctgttgtgagag 1036488  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1036487 aaatttgagtactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaagggtagaagatttggtttatgtgcatattaatcttcgacta 1036388  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| ||  |||||||       ||||||||||||||||||||    
T  1036387 ttgtcaaggaaagaatgtggatat-aagaaaggacaatcaagaatgtggga 1036338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 56 - 251
Target Start/End: Original strand, 8357283 - 8357476
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||  |||||||| ||||| |||||     
T  8357283 tttaaagcttcttgtgcaaccttgttcttcctcatgttgtgagagaaattggggtactttctcttttatccattctttgaaaagaaataaaatagatcc- 8357381  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| |||||||||||       ||||||||||||||||||||    
T  8357382 aaaagggtagaagatttggtttatgtgcatactaatcttcgactcttgtcaaggaaagaagatggatat-aagaaaggacaatcaagaatgtggga 8357476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 14795354 - 14795607
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| |||| ||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14795354 cttccaaagtggtcatcgtccactttggccaccatcgaactatccataaacttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 14795453  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14795454 aaatttgagtactttctcttttatccagtctttaaaaagaaacaaaatggatccaaaaagggtagaaaatttggtttatgtgcatattaatcttcgacta 14795553  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtgggatatt 255  Q
    |||||||||||| |||||||||||       ||||||||||||||||||||||||    
T  14795554 ttgtcaaggaaagaagatggatat-aagaaaggacaatcaagaatgtgggatatt 14795607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 8063868 - 8063619
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8063868 cttccaaagtggtcgccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcctgtgcaaccttgttcttcctcctgttgtgagag 8063769  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8063768 aaatttgagtactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaagggtagaagatttggtttatgtgcatattaatcttcgacta 8063669  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| ||  |||||||       ||||||||||||||||||||    
T  8063668 ttgtcaaggaaagaatgtggatat-aagaaaggacaatcaagaatgtggga 8063619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 251
Target Start/End: Original strand, 31226689 - 31226934
Alignment:
Q  5 caaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaat 104  Q
    |||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31226689 caaagtggtcgccgtccactttgggcaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaat 31226788  T
Q  105 ttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgactattgt 204  Q
    ||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31226789 ttgagtactttctcttttatcaattctttgaaaagaaacaaaatggatccaaaaagggtagaagatttggtttatgtgcatattaatcttcgactattgt 31226888  T
Q  205 caaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||| |||||||||||       ||||||||||||||||||||    
T  31226889 caaggaaagaagatggatat-aagaaaggacaatcaagaatgtggga 31226934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 3403345 - 3403096
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  3403345 cttccaaagtggttgccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcctgtgcaaccttgtttttcctcctgttgtgagag 3403246  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3403245 aaatttgagtactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaagggtagaagatttggtttatgtgcatattaatcttcgacta 3403146  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    | |||||||||| ||| |||||||       ||||||||||||||||||||    
T  3403145 tagtcaaggaaagaaggtggatat-aagaaaggacaatcaagaatgtggga 3403096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 52572537 - 52572760
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  52572537 cttccaaagtggtcgccgtccactttggccactgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgatgtaagag 52572636  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||| ||| ||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||     
T  52572637 aaattagagaactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaaggatagaagatttggtttatgtgcatactaatcttcgactc 52572736  T
Q  201 ttgtcaaggaaataagatggatat 224  Q
    |||||||||||| |||||||||||    
T  52572737 ttgtcaaggaaagaagatggatat 52572760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 53322687 - 53322936
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| ||||||| ||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  53322687 cttccaaagtggtcgccgtccagtttggccactgttgtactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgctgtgagag 53322786  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||| |||||||||||||||||  ||||||||||||     
T  53322787 aaattggagtactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaaggatagaagatttggtttatgtgcatcctaatcttcgactt 53322886  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| |||||||||||       ||||||||||||||||||||    
T  53322887 ttgtcaaggaaagaagatggatat-aagaaaggacaatcaagaatgtggga 53322936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 52122655 - 52122487
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||  |||||||||||||||||||||    
T  52122655 tttaaagcttcttgtgcaaccttgttcttcctcatgttgtgagagaaattggggtactttctcttttatccattctttgaaaagaaacaaaatggatcca 52122556  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatat 224  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  52122555 aaaagggtagaagatttggtttatgtgcatattaatcttcgactcttgtcaaggaaagaagatggatat 52122487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 56 - 251
Target Start/End: Original strand, 41146008 - 41146201
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||| |||||||||||| |||||||||||  |||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||     
T  41146008 tttaaagtttcttgtgcaacattgttcttccttatgttgtgagagaaattggagtactttctcttttatccattctttgaaaagaaacaaaatggatcc- 41146106  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| | |||||||||       ||||||||||||||||||||    
T  41146107 aaaagggtagaagatttggtttatgtgcatactaatcttcgactcttgtcaaggaaagacgatggatat-aagaaaggacaatcaagaatgtggga 41146201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 5325484 - 5325340
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagc----------ttgctttaaagcttcttgtgcaaccttgttcttcctcct 90  Q
    |||||||||| |||| |||||||||||||||||||||||| ||||||||||          |||||||||||||||||||||||| |||||||||||| |    
T  5325484 cttccaaagtggtcatcgtccactttggccaccgtcgaaccatccaaaagcatccaaaagcttgctttaaagcttcttgtgcaacattgttcttcctcat 5325385  T
Q  91 gttgtgagagaaatttgagtactttctcttttatccattcttgaa 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5325384 gttgtgagagaaatttgagtactttctcttttatccattcttgaa 5325340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 54433545 - 54433652
Alignment:
Q  78 tgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggttt 177  Q
    |||||||| || |||| ||||| ||||| |||||||| |||||||||  ||||||  |||||||| |||||||||||||||||||| ||| || ||||||    
T  54433545 tgttcttcatcatgttctgagaaaaattggagtacttactcttttatttattctttgaaaagaaataaaatggatccaaaaagggttgaagatgtggttt 54433644  T
Q  178 atgtgcat 185  Q
    ||| ||||    
T  54433645 atgcgcat 54433652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 40096004 - 40096253
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40096004 cttccaaagtggtcgccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcctgtgcaaccttgttcttcctcctgttgtgagag 40096103  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40096104 aaatttgagtactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaagggtagaagatttggtttatgtgcatattaatcttcgacta 40096203  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| ||  |||||||       ||||||||||||||||||||    
T  40096204 ttgtcaaggaaagaatgtggatat-aagaaaggacaatcaagaatgtggga 40096253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 39521117 - 39521366
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39521117 cttccaaagtggtcgccgtccactttggccatcgtcgaactatccaaaagcttgctttaaagattcttgtgcaaccttgttcttcctcctgttgtgagag 39521216  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||| ||||||  |||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  39521217 aaatttgagtactttctcttttatctattctttgaaaagaaacaaaatagatccaaaaagggtagaagatttggtttatgtgcatactaatcttcgacta 39521316  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| |||||||||||       ||||||||||||||||||||    
T  39521317 ttgtcaaggaaagaagatggatat-aagaaaggacaatcaagaatgtggga 39521366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 36660813 - 36661024
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36660813 cttccaaagtggtcgccgtccactttagccaccgtcaaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctattgtgagag 36660912  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||| ||||||||||||||||||||||||||  |||||||| |||||||||||||||| ||||||| ||||||||| |||||||| ||||||||||||     
T  36660913 aaattggagtactttctcttttatccattctttgaaaagaaagaaaatggatccaaaaatggtagaagatttggtttgtgtgcatactaatcttcgactc 36661012  T
Q  201 ttgtcaaggaaa 212  Q
    ||||||||||||    
T  36661013 ttgtcaaggaaa 36661024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 56 - 251
Target Start/End: Complemental strand, 27397833 - 27397639
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  27397833 tttaaagcttcttgtgcaaccttgttcttcctcatgttgtgagagaaattggagtactttctcttttatccattcttagaaaagaaacaaaatggatcca 27397734  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| |||||||||||       ||||||||||||||||||||    
T  27397733 aaaagggtagaagatttggtttatgtgcatactaatcttcgactcttgtcaaggaaagaagatggatat-aagaaaggacaatcaagaatgtggga 27397639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 56 - 251
Target Start/End: Original strand, 11830090 - 11830284
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||  |||||||||||||||||||||    
T  11830090 tttaaagcttcttgtgcaaccttgttcttcctcatgttgtgagagaaattggagtactttctcatttatccattctttgaaaagaaacaaaatggatcca 11830189  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| ||||||||||| |||||| |||||||||||| |||||||||||| |||||||||||       ||||||||||||||||||||    
T  11830190 aaaagggtagaagatttggtttatatgcatactaatcttcgactcttgtcaaggaaagaagatggatat-aagaaaggacaatcaagaatgtggga 11830284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 38265099 - 38265220
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||  |||||||||||||||||||||    
T  38265099 tttaaagcttcttgtgcaaccttgttcttcctcatgttgtgagagaaattggggtactttctcttttatccattctttgaaaagaaacaaaatggatcca 38265198  T
Q  156 aaaagggtagaatatttggttt 177  Q
    |||||||||||| |||||||||    
T  38265199 aaaagggtagaagatttggttt 38265220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 25557619 - 25557726
Alignment:
Q  78 tgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggttt 177  Q
    |||||||| || |||| ||||||||||| |||||||| ||||||||| |||||||  |||||||| |||||||||||||||||||  ||| |||||||||    
T  25557619 tgttcttcatcatgttctgagagaaattggagtacttactcttttattcattctttgaaaagaaataaaatggatccaaaaagggctgaagatttggttt 25557718  T
Q  178 atgtgcat 185  Q
    ||| ||||    
T  25557719 atgcgcat 25557726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11830042 - 11830079
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcga 38  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  11830042 cttccaaagtggtcgccgtccactttggccaccgtcga 11830079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 28915200 - 28915232
Alignment:
Q  45 caaaagcttgctttaaagcttcttgtgcaacct 77  Q
    |||||||||||||| ||||||||||||||||||    
T  28915200 caaaagcttgctttgaagcttcttgtgcaacct 28915232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 22484614 - 22484863
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  22484614 cttccaaagtggtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagtttcttgtgcaaccttgttcttcctcctgttgtgagtg 22484713  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  22484714 aaatttgagtactttctcttttatccattcttttaaaagaaacaaaatggatccaaaaggggtagaagatttggtttatgtgcatattaatcttcgacta 22484813  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| ||||| |||||       ||||||||||||||||||||    
T  22484814 ttgtcaaggaaagaagatcgatat-aagaaaggacaatcaagaatgtggga 22484863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 40308609 - 40308360
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40308609 cttccaaagtggtcgccgtccactttggctaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctcttgtgagag 40308510  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    |||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||    
T  40308509 aaatttgagtactttctcttctatccattctttgaaaagaaacaaaatggatccaaaaagggtataagatttggtttatgtgcatactaatcttcgacta 40308410  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| |||||||||||       ||||||||||||||||||||    
T  40308409 ttgtcaaggaaagaagatggatat-aagaaaggacaatcaagaatgtggga 40308360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6124534 - 6124756
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6124534 cttccaaagtggtcgctgtccactttggccaccgtcaaactatccaaaagcttgctttaaagcttcttgtgtaaccttgttcttcctcctgttgtgagag 6124633  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||    
T  6124634 aaatttgagtactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaagggtagaaaatttgg-ttatgtgcatactaatcttcgacta 6124732  T
Q  201 ttgtcaaggaaataagatggatat 224  Q
    |||||||||||| |||||||||||    
T  6124733 ttgtcaaggaaagaagatggatat 6124756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 56 - 267
Target Start/End: Complemental strand, 4170238 - 4170028
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||  |||||||||||||||||||||    
T  4170238 tttaaagcttcttgtgcaaccttgttcttcctcatgttgtgagagaaattggggtactttctcttttatccattctttgaaaagaaacaaaatggatcca 4170139  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtgggatatt 255  Q
    |||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| |||||||||||       |||||||||||||||||||| |||    
T  4170138 aaaagggtagaagatttggtttatgtgcatactaatcttcgactcttgtcaaggaaagaagatggatat-aagaaaggacaatcaagaatgtgggacatt 4170040  T
Q  256 cttggacatgcg 267  Q
    | |||| |||||    
T  4170039 cgtggagatgcg 4170028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 38602106 - 38601938
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||  |||||||||||||||||||||    
T  38602106 tttaaagcttcttgtgcaaccttgttcttcctcatgttgtgagagaaattggggtactttctcttttatccattctttgaaaagaaacaaaatggatcca 38602007  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatat 224  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  38602006 aaaagggtagaagatttggtttatgtgcatattaatcttcgactcttgtcaaggaaagaagatggatat 38601938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 56 - 251
Target Start/End: Complemental strand, 6497388 - 6497194
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||  |||| ||||||||||||||||    
T  6497388 tttaaagcttcttgtgcaaccttgttcttcctcatgttgtgagagaaattggagtactttttcttttatccattctttgaaaataaacaaaatggatcca 6497289  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||| |||||||||||       ||||||||||||||||||||    
T  6497288 aaaagggtagaagatttggtttatgtgcatactaatcttcaactcttgtcaaggaaagaagatggatat-aagaaaggacaatcaagaatgtggga 6497194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 33325155 - 33325278
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||  |||||||||||||||||||||    
T  33325155 tttaaagcttcttgtgcaaccttgttcttcctcatgttgtgagagaaattggggtactttctcttttatccattctttgaaaagaaacaaaatggatcca 33325254  T
Q  156 aaaagggtagaatatttggtttat 179  Q
    |||||||||||| |||||||||||    
T  33325255 aaaagggtagaagatttggtttat 33325278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6497436 - 6497399
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcga 38  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  6497436 cttccaaagtggtcgccgtccactttggccaccgtcga 6497399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 6916635 - 6916386
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6916635 cttccaaagtggtcgccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcctgtgcaaccttgttcttcctcctgttgtgagag 6916536  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6916535 aaatttgagtactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaagggtagaagatttggtttatgtgcatattaatcttcgacta 6916436  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| ||  |||||||       ||||||||||||||||||||    
T  6916435 ttgtcaaggaaagaatgtggatat-aagaaaggacaatcaagaatgtggga 6916386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 38330784 - 38331033
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38330784 cttccaaagtggtcgccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcctgtgcaaccttgttcttcctcctgttgtgagag 38330883  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38330884 aaatttgagtactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaagggtagaagatttggtttatgtgcatattaatcttcgacta 38330983  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| ||  |||||||       ||||||||||||||||||||    
T  38330984 ttgtcaaggaaagaatgtggatat-aagaaaggacaatcaagaatgtggga 38331033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 52895474 - 52895263
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52895474 cttccaaagtggtcgccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcctgtgcaaccttgttcttcctcctgttgtgagag 52895375  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  52895374 aaatttgagtactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaagggtagaagatttggtttatgtgcatattaatcttcgacta 52895275  T
Q  201 ttgtcaaggaaa 212  Q
    ||||||||||||    
T  52895274 ttgtcaaggaaa 52895263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 8132517 - 8132766
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8132517 cttccaaagtggtcgccgtccactttggccatcgtcgaactatccaaaagcttgctttaaagcttcctgtgcaaccttgttcttcctcctgttgtgagag 8132616  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  8132617 aaatttgagtactttctcttttatccattctttgaaaagaaataaaatggatccaaaaagggtagaagatttggtttatgtgcatattaatcttcgactg 8132716  T
Q  201 ttgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| ||  |||||||       ||||||||||||||||||||    
T  8132717 ttgtcaaggaaagaatgtggatat-aagaaaggacaatcaagaatgtggga 8132766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 3427207 - 3427429
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagag 100  Q
    |||||||||| ||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3427207 cttccaaagtggtcgctgtccactttggccaccgtcaaactatccaaaagcttgctttaaagcttcttgtgtaaccttgttcttcctcctgttgtgagag 3427306  T
Q  101 aaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgacta 200  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||    
T  3427307 aaatttgagtactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaagggtagaaaatttgg-ttatgtgcatactaatcttcgacta 3427405  T
Q  201 ttgtcaaggaaataagatggatat 224  Q
    |||||||||||| |||||||||||    
T  3427406 ttgtcaaggaaagaagatggatat 3427429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 28659064 - 28658830
Alignment:
Q  16 ccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtacttt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28659064 ccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaattagagtacttt 28658965  T
Q  116 ctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataa 215  Q
    |||||||||||||||||  ||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||| ||||||| |||| ||    
T  28658964 ctcttttatccattctttgaaaagaaacaaaatggatccaaaaaggatagaagatttggtttatgtgcatactaatcttcgactcttgtcaatgaaagaa 28658865  T
Q  216 gatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||       ||||||||||||||||||||    
T  28658864 gatggatat-aagaaaggacaatcaagaatgtggga 28658830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 56 - 267
Target Start/End: Original strand, 5984579 - 5984787
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  5984579 tttaaagcttcttgtgcaaccttgttcttcctcatgttg--agagaaatttgagtactttctcttttatccattctttaaaaagaaacaaaatggatcta 5984676  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtgggatatt 255  Q
    ||||||||| || |||||||||||||||||| |||||||||||| |||||||||||| |||||||||||       |||||||||||||||||||| |||    
T  5984677 aaaagggtataagatttggtttatgtgcatactaatcttcgactcttgtcaaggaaagaagatggatat-aagaaaggacaatcaagaatgtgggacatt 5984775  T
Q  256 cttggacatgcg 267  Q
     ||||| |||||    
T  5984776 attggagatgcg 5984787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 56 - 251
Target Start/End: Original strand, 30324111 - 30324305
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  30324111 tttaaagcttcttgtgcaaccttgttcttcctcatgttgtgagagaaattggagtactttctcttttatccattctttgaaaagaaacaaaatggatcca 30324210  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||| |||||||||||| |||||| ||||       ||||||||||||||||||||    
T  30324211 aaaagggtagaatatttggtttatgtggatactaatctccgactcttgtcaaggaaagaagatgaatat-aagaaaggacaatcaagaatgtggga 30324305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 1043564 - 1043732
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||  |||||||||||||| ||||||    
T  1043564 tttaaagcttcttgtgcaaccttgttcttcctcatgttgtgagagaaatttggatactttctcttttatccattctttgaaaagaaacaaaatagatcca 1043663  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatat 224  Q
    |||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| |||||||||||    
T  1043664 aaaagggtagaagatttggtttatgtgcatactaatcttcgactcttgtcaaggaaagaagatggatat 1043732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 25257008 - 25257176
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||| |||||||||||||||||| |||||| ||||||||||||||||  |||||||||||||||||||||||||  |||||||| ||||||||||||    
T  25257008 tttaaagtttcttgtgcaaccttgttattcctcatgttgtgagagaaattgcagtactttctcttttatccattctttgaaaagaaataaaatggatcca 25257107  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatat 224  Q
    |||||||||||| |||||||||||||||||| |||||||||| | |||||||||||| || ||||||||    
T  25257108 aaaagggtagaagatttggtttatgtgcatactaatcttcgattcttgtcaaggaaagaaaatggatat 25257176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5984531 - 5984568
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcga 38  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  5984531 cttccaaagtggtcgccgtccactttggccaccgtcga 5984568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 251
Target Start/End: Complemental strand, 30204 - 29959
Alignment:
Q  5 caaagttgtcaccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaat 104  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30204 caaagtggtcgccgtccactttggccaccgtcgaactatccaaaagcttgctttaaagcttcttgtgcaaccttgttctttctcctgttgtgagagaaat 30105  T
Q  105 ttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatccaaaaagggtagaatatttggtttatgtgcatattaatcttcgactattgt 204  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  30104 ttgagtactttctcttttatccattctttgaaaagaaacaaaatggatccaaaaagggtagaagatttggtttatgtgcatactaatcttcgactattgt 30005  T
Q  205 caaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
     ||||||| |||||||||||       ||||||||||||||||||||    
T  30004 taaggaaagaagatggatat-aagaaaggacaatcaagaatgtggga 29959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 7873 - 7705
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||  |||||||||||||||||||||    
T  7873 tttaaagcttcttgtgcaaccttgttcttcctcatgttgtgagagaaattggggtactttctcttttatccattctttgaaaagaaacaaaatggatcca 7774  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatat 224  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  7773 aaaagggtagaagatttggtttatgtgcatattaatcttcgactcttgtcaaggaaagaagatggatat 7705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 56 - 251
Target Start/End: Complemental strand, 27502 - 27308
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  27502 tttaaagcttcctgtgcaaccttgttcttcctcatgttgtgagagaaattggagtactttctcttttatccattctttgaaaagaaacaaaatggatcca 27403  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| |||||||||||       ||||||||||||||||||||    
T  27402 aaaagggtagaagatttggtttatgtgcatactaatcttcgactcttgtcaaggaaagaagatggatat-aagaaaggacaatcaagaatgtggga 27308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27550 - 27513
Alignment:
Q  1 cttccaaagttgtcaccgtccactttggccaccgtcga 38  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  27550 cttccaaagtggtcgccgtccactttggccaccgtcga 27513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 56 - 251
Target Start/End: Complemental strand, 41800 - 41606
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    ||||||||||||||| ||||||||||||||||  |||| ||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  41800 tttaaagcttcttgtacaaccttgttcttccttatgttatgagagaaattggagtactttctcttttatccattctttgaaaagaaacaaaatggatcca 41701  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatggatatnnnnnnnggacaatcaagaatgtggga 251  Q
    |||||||||||| |||||||||||||||||| |||||||  ||| |||||||||||| |||||||||||       ||||||||||||||||||||    
T  41700 aaaagggtagaagatttggtttatgtgcatactaatcttttactcttgtcaaggaaagaagatggatat-aagaaaggacaatcaagaatgtggga 41606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 25336 - 25172
Alignment:
Q  56 tttaaagcttcttgtgcaaccttgttcttcctcctgttgtgagagaaatttgagtactttctcttttatccattcttgaaaaagaaacaaaatggatcca 155  Q
    |||||||||||||||| ||||||||||||| || |||| ||||||||||| | ||||||||||||||||||||||||  |||||||||||||||||||||    
T  25336 tttaaagcttcttgtgaaaccttgttcttcatcatgttttgagagaaattggggtactttctcttttatccattctttgaaaagaaacaaaatggatcca 25237  T
Q  156 aaaagggtagaatatttggtttatgtgcatattaatcttcgactattgtcaaggaaataagatgg 220  Q
    |||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| |||||||    
T  25236 aaaagggtagaagatttggtttatgtgcatactaatcttcgactcttgtcaaggaaagaagatgg 25172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University