View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20507_low_1 (Length: 432)

Name: NF20507_low_1
Description: NF20507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20507_low_1
NF20507_low_1
[»] chr4 (14 HSPs)
chr4 (16-305)||(27461009-27461298)
chr4 (188-341)||(27504986-27505138)
chr4 (188-341)||(27480561-27480715)
chr4 (24-146)||(27487830-27487952)
chr4 (20-146)||(27505194-27505320)
chr4 (61-145)||(47042610-47042694)
chr4 (66-144)||(20485684-20485762)
chr4 (66-144)||(51928851-51928929)
chr4 (62-146)||(27480402-27480486)
chr4 (66-141)||(24354855-24354930)
chr4 (57-144)||(27477314-27477401)
chr4 (214-291)||(27522755-27522830)
chr4 (298-341)||(27488050-27488093)
chr4 (190-242)||(27499815-27499867)
[»] chr7 (2 HSPs)
chr7 (66-146)||(37175756-37175836)
chr7 (368-417)||(47142598-47142647)
[»] chr8 (3 HSPs)
chr8 (66-145)||(28811056-28811135)
chr8 (66-144)||(13659622-13659700)
chr8 (66-144)||(13718264-13718342)
[»] chr2 (3 HSPs)
chr2 (66-145)||(35808805-35808884)
chr2 (66-144)||(26204043-26204121)
chr2 (66-146)||(42348129-42348209)
[»] chr5 (1 HSPs)
chr5 (66-144)||(13912389-13912467)
[»] chr1 (2 HSPs)
chr1 (66-144)||(42396948-42397026)
chr1 (361-415)||(29682050-29682104)
[»] chr6 (2 HSPs)
chr6 (67-145)||(22685789-22685867)
chr6 (67-145)||(22753201-22753279)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 27461009 - 27461298
Alignment:
Q  16 ctgaagagaagcacataattattcaataaaaattggtttagcaaccagttgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttcc 115  Q
    ||||||||||||| |||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27461009 ctgaagagaagcagataattattcaataaaaattggttaagcaacaagtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttcc 27461108  T
Q  116 ccgcgagagtttgaatctctcaggcgacgaannnnnnnnn-aacaaaattgagttactctacactttacttca-aatcaaattctttaatgacaaagttg 213  Q
    | ||||||||| |||||||||||||||||||          |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  27461109 ctgcgagagttcgaatctctcaggcgacgaattctttttctaacaaaattgagttactctacactttactttataatcaaattctttaatgacaaagttg 27461208  T
Q  214 tttttcttttgctttgaaatgactagttacaattttgctctcaaaaaagaaagactaatttcaattttgctgtaaaaatatgtgtaatttca 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  27461209 tttttcttttgctttgaaatgactagttacaattttgctctcaaaaaagaaag--taatttcaattttgctgtaaaaaaatgtgtaatttca 27461298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 188 - 341
Target Start/End: Complemental strand, 27505138 - 27504986
Alignment:
Q  188 aatcaaattctttaatgacaaagttgtttttcttttgctttgaaatgactagttacaattttgctctcaaaaaagaaagactaatttcaattttgctgta 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||  |||||||||| |||||||||||    
T  27505138 aatcaaattctttaatgacaaagttgtttttcttttgctttgaaattactagttacatttttgctctaaaaaaagagcgactaatttctattttgctgta 27505039  T
Q  288 aaaatatgtgtaatttcaatttatgaacttgggactcgccacatattttaccat 341  Q
    |||| ||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  27505038 aaaa-atgtgtaatttcaatttatgaacatgggactagccacatattttaccat 27504986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 188 - 341
Target Start/End: Original strand, 27480561 - 27480715
Alignment:
Q  188 aatcaaattctttaatgacaaagttgtttttcttttgctttgaaatgactagttacaattttgctctcaaaaaagaaagactaatttcaattttgctgta 287  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  27480561 aatcaaattcttcaatgacaaagttgtttttcttttgctttgatatgactagttacagttttgctctcaaaagagaaagactaatttcaattttgctgta 27480660  T
Q  288 aaaa-tatgtgtaatttcaatttatgaacttgggactcgccacatattttaccat 341  Q
    ||||  | ||| || ||| |||||||||| |||||||| |||||| |||||||||    
T  27480661 aaaacaaagtgcaagttccatttatgaacatgggactctccacatcttttaccat 27480715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 27487830 - 27487952
Alignment:
Q  24 aagcacataattattcaataaaaattggtttagcaaccagttgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgaga 123  Q
    ||||| |||||||||  |||| || |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27487830 aagcagataattattggataagaactggtttagcaacaagtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgaga 27487929  T
Q  124 gtttgaatctctcaggcgacgaa 146  Q
    ||| |||||||||||||||||||    
T  27487930 gttcgaatctctcaggcgacgaa 27487952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 27505320 - 27505194
Alignment:
Q  20 agagaagcacataattattcaataaaaattggtttagcaaccagttgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgc 119  Q
    |||||||||||||||||||  |||||||||| | ||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27505320 agagaagcacataattattggataaaaattgctctagcaacaagtcactttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgc 27505221  T
Q  120 gagagtttgaatctctcaggcgacgaa 146  Q
    ||||||| |||||||||||| ||||||    
T  27505220 gagagttcgaatctctcaggtgacgaa 27505194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 47042610 - 47042694
Alignment:
Q  61 cagttgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacga 145  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47042610 cagtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacga 47042694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 20485762 - 20485684
Alignment:
Q  66 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacg 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  20485762 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 20485684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 51928851 - 51928929
Alignment:
Q  66 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacg 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51928851 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 51928929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 27480402 - 27480486
Alignment:
Q  62 agttgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacgaa 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||    
T  27480402 agttgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgtgagagttcgaatctctcaggcaacgaa 27480486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 24354855 - 24354930
Alignment:
Q  66 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcg 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24354855 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcg 24354930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 57 - 144
Target Start/End: Original strand, 27477314 - 27477401
Alignment:
Q  57 caaccagttgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacg 144  Q
    |||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| || |||||||||||| ||||    
T  27477314 caacaagtcgctttggccgagtgggtaaggcgtgtgcctgctaattacatggggtttccccgcaagatttcgaatctctcaggtgacg 27477401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 291
Target Start/End: Complemental strand, 27522830 - 27522755
Alignment:
Q  214 tttttcttttgctttgaaatgactagttacaattttgctctcaaaaaagaaagactaatttcaattttgctgtaaaaa 291  Q
    ||||||||||| | ||||||| |||   ||||||||| ||||||||||||||| | ||||||||||||||||||||||    
T  27522830 tttttcttttgttgtgaaatgtctaa--acaattttgttctcaaaaaagaaaggcaaatttcaattttgctgtaaaaa 27522755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 341
Target Start/End: Original strand, 27488050 - 27488093
Alignment:
Q  298 taatttcaatttatgaacttgggactcgccacatattttaccat 341  Q
    |||||||||||||||||| ||||||| || ||||||||||||||    
T  27488050 taatttcaatttatgaacatgggactagctacatattttaccat 27488093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 27499867 - 27499815
Alignment:
Q  190 tcaaattctttaatgacaaagttgtttttcttttgctttgaaatgactagtta 242  Q
    |||||||||||||| |||||  ||||||||||| | ||||||| |||||||||    
T  27499867 tcaaattctttaataacaaaagtgtttttctttagttttgaaacgactagtta 27499815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 37175756 - 37175836
Alignment:
Q  66 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacgaa 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37175756 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacgaa 37175836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 47142598 - 47142647
Alignment:
Q  368 attgtttaagaacaacaaatctgaagttatgtttaccttacgatcaaatt 417  Q
    ||||||||||||||||||||| ||| ||||| ||||||||| ||||||||    
T  47142598 attgtttaagaacaacaaatccgaaattatgcttaccttacaatcaaatt 47142647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 28811135 - 28811056
Alignment:
Q  66 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28811135 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacga 28811056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 13659700 - 13659622
Alignment:
Q  66 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacg 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13659700 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 13659622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 13718342 - 13718264
Alignment:
Q  66 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacg 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13718342 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 13718264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 35808805 - 35808884
Alignment:
Q  66 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35808805 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacga 35808884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 26204043 - 26204121
Alignment:
Q  66 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacg 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26204043 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 26204121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 42348209 - 42348129
Alignment:
Q  66 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacgaa 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  42348209 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgtcgaa 42348129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 13912389 - 13912467
Alignment:
Q  66 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacg 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13912389 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 13912467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 42397026 - 42396948
Alignment:
Q  66 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacg 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42397026 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 42396948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 415
Target Start/End: Original strand, 29682050 - 29682104
Alignment:
Q  361 taaaaatattgtttaagaacaacaaatctgaagttatgtttaccttacgatcaaa 415  Q
    |||||| ||||||||||||||||||||| ||| ||||| ||| ||||| ||||||    
T  29682050 taaaaaaattgtttaagaacaacaaatccgaaattatgcttatcttacaatcaaa 29682104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 22685867 - 22685789
Alignment:
Q  67 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacga 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||    
T  22685867 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgtgagagttcgaatctcttaggtgacga 22685789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 22753201 - 22753279
Alignment:
Q  67 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacga 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||    
T  22753201 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgtgagagttcgaatctcttaggtgacga 22753279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University