View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20507_low_3 (Length: 397)
Name: NF20507_low_3
Description: NF20507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20507_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 28 - 366
Target Start/End: Complemental strand, 16060866 - 16060519
Alignment:
| Q |
28 |
ttccgacaccaaatcatttcaaatccgactctttgaaccatttcaagtttcttcagctttctatttgaatgtacgaaagtttgaatttgagcacttgttt |
127 |
Q |
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| T |
16060866 |
ttccaacaccaaattgtctcaaatccaactctttgaaccatttcaagtttcttcagctttccatttcaatgtacgaaagtttgaatttgagcacttgttt |
16060767 |
T |
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| Q |
128 |
gtggtagcattgcacaaatgtttcttgcaaaatgtgaatctagtaatggaattatgatgtttacatctagaaccgacaacaattgtacctctacaaattt |
227 |
Q |
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| T |
16060766 |
gtgttagcgttgcacagatgtttcttgcaaaatgtgaatctagtaatggaattatgatgtttacatctagaaccaacaacaattgtacctctacaaattt |
16060667 |
T |
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| Q |
228 |
gaagtaagaactttaacatgttttccatttttcttagaaaatgcacacaacaataaatatc---accaattgctagtct------tatatgcttctttcc |
318 |
Q |
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| T |
16060666 |
ggagtaagaactttaacatgttttccttttttcttagaaaatgcacacaacagtaaatatcattaccgattgctagtcttatatatatatgcttctttcc |
16060567 |
T |
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| Q |
319 |
cttgacctcgatatacattggatgttgtcgatcctcatatcaatcagg |
366 |
Q |
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| T |
16060566 |
cgtgacctcgatatacatttgatgttgtcgatcctcatatcaatcagg |
16060519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 282
Target Start/End: Complemental strand, 16097776 - 16097687
Alignment:
| Q |
190 |
acatctagaaccgacaacaattgtacctctacaaatttgaagtaagaactttaacatgttttccatttttcttagaaaatgcacacaacaata |
282 |
Q |
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| T |
16097776 |
acatcttgaaccatcaataattgtacctctaataatt-gaagtaagaattttaacattttttcc--ttttcttaagaaatgcacacaacaata |
16097687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 159
Target Start/End: Original strand, 16062557 - 16062676
Alignment:
| Q |
39 |
aatcatttcaaatccgactctttgaaccatttcaagtttcttcagctttctatttgaatgtacgaaagtttgaatttgagcacttgtttgtggtagcatt |
138 |
Q |
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||||||| ||||| | ||||| |||||||| ||| |||||||||||||| ||||||||| |||| ||| ||||||| | |||||| || ||| || |
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| T |
16062557 |
aatcattgcaaatttggctcttcgaaccattgcaattttcttcagctttcctattgaatgtatgaaa-ttttaatttgaactcttgttcatgtcagcgtt |
16062655 |
T |
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| Q |
139 |
gcacaaatgtttcttgcaaaa |
159 |
Q |
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| T |
16062656 |
gcacaaatgtttcatgcaaaa |
16062676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 159
Target Start/End: Original strand, 16073952 - 16074071
Alignment:
| Q |
39 |
aatcatttcaaatccgactctttgaaccatttcaagtttcttcagctttctatttgaatgtacgaaagtttgaatttgagcacttgtttgtggtagcatt |
138 |
Q |
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| T |
16073952 |
aatcattacaaatttggctcttcgaaccattgtaattttcttcagctttcctattgaatgtatgaaatttt-aatttgagctcttgttcatgtcagcgtt |
16074050 |
T |
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| Q |
139 |
gcacaaatgtttcttgcaaaa |
159 |
Q |
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| T |
16074051 |
gcacaaatgtttcctgcaaaa |
16074071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 16075013 - 16074959
Alignment:
| Q |
164 |
aatctagtaatggaattatgatgtttacatctagaaccgacaacaattgtacctc |
218 |
Q |
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| T |
16075013 |
aatctagtaacggaattatgatgcctacatctagagccaacaccaattgtacctc |
16074959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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