View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20507_low_6 (Length: 292)
Name: NF20507_low_6
Description: NF20507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20507_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 28667404 - 28667660
Alignment:
| Q |
18 |
tgaacttggtcgaatgaaactcgatgctcgctgtttttctttgtttttgccatatttcatcatctgcactgaatataccatctccaagtaagtcccttac |
117 |
Q |
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| T |
28667404 |
tgaacttggtcgaatgaaactcgatgctcgctgtttttctttgtttttgccatatttcatcatctgcactgaatataccatctccaagtaagtcccttac |
28667503 |
T |
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| Q |
118 |
catgtttctaaagtaagttcctttaggaaagttgatgaatttggttttgagaaggtgttcgaggtttcgaggatcagaagtgactatgcagttaaggctg |
217 |
Q |
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| T |
28667504 |
catgtttctaaagtaagttcctttaggaaagttgatgaatttggttttgagaaggtgttcgaggtttcgaggatcagaagtgactatgcagttaaggctg |
28667603 |
T |
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| Q |
218 |
ctgaaagaaggacctttgaatctaaaagtcccattttgtttgttaagaatgtctgtg |
274 |
Q |
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| T |
28667604 |
ctgaaagaaggacctttgaatctaaaagtcccattttgtttgttaagaatgtctgtg |
28667660 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 13887135 - 13887047
Alignment:
| Q |
20 |
aacttggtcgaatgaaactcgatgctcgctgtttttctttgtttttgccatatttcatcatctgcactgaatataccatctccaagtaa |
108 |
Q |
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| T |
13887135 |
aactttgttgaatgaaactcgatactcgctgttttcctttgtttctgccatgtttcgttatctacagcgaaaataccgtctccaagtaa |
13887047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 13898075 - 13898126
Alignment:
| Q |
26 |
gtcgaatgaaactcgatgctcgctgtttttctttgtttttgccatatttcat |
77 |
Q |
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| T |
13898075 |
gtcgaatgaaactcgatactcgctattttcctttgtttctgccatgtttcat |
13898126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 1035132 - 1035214
Alignment:
| Q |
26 |
gtcgaatgaaactcgatgctcgctgtttttctttgtttttgccatatttcatcatctgcactgaatataccatctccaagtaa |
108 |
Q |
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||||||||||||||||| || ||| |||| |||||||| |||||| |||||| || ||| |||| ||||| ||||| ||||| |
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| T |
1035132 |
gtcgaatgaaactcgatactagctattttcctttgtttctgccatgtttcattgtcagcagtgaaaataccgtctccgagtaa |
1035214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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