View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20508_high_2 (Length: 436)
Name: NF20508_high_2
Description: NF20508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20508_high_2 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 20 - 396
Target Start/End: Complemental strand, 44662801 - 44662424
Alignment:
| Q |
20 |
gcaatgacgttcattcctgatgcagaattgttgccaacggttgtagtcaatgccaagctctcaagagaagagaaacatgatgaagagaacattattggac |
119 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44662801 |
gcaatgactttcattcctgatgcagaattgttgccaacggttgtagtcaatgccaaactctcaagagaagagaaacatgatgaagagaacattattggac |
44662702 |
T |
|
| Q |
120 |
ttacaaaccttgatgtcacgaagtccataggtgaaacagatgccaatttggatgcagtaattgctcactatgctcagactataaccatgtacaacatgcg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44662701 |
ttacaaaccttgatgtcacgaagtccataggtgaaacagatgccaatttggatgcaataattgctcactatgctcagactataaccaagtacaacatgcg |
44662602 |
T |
|
| Q |
220 |
taacttaggtaggcttttggtgcttcatatttttctatctttagatactattttataccaaaaaataccttgtagacaattaattcaatctcttattgat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44662601 |
taacttaggtaggcttttggtgcttcatatttttctatctttagatactattttataccaaaaaataccttgtagacaattaattcaatctcttattgat |
44662502 |
T |
|
| Q |
320 |
tgacatttataga-tgacttatcggattttgagtggtggtcgaatctgatcgtttgaagcatcgtaccttcgccggct |
396 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44662501 |
tgacatttatagaccgacttatcggattttgagtggtggtcgaatctgatcgtttgaagcatcgtaccttcgtcggct |
44662424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 152 - 263
Target Start/End: Complemental strand, 44685083 - 44684974
Alignment:
| Q |
152 |
gaaacagatgccaatttggatgcagtaattgctcactatgctcagactataaccatgtacaacatgcgtaacttaggtaggcttttggtgcttcatattt |
251 |
Q |
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|||| ||||||||||||||||||| ||||||||| |||||| ||||||||| || ||||||| | ||||||||||||||| |||||||||||| |||| |
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| T |
44685083 |
gaaaaagatgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggtagggttttggtgcttc--attt |
44684986 |
T |
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| Q |
252 |
ttctatctttag |
263 |
Q |
| |
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|||||| ||||| |
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| T |
44684985 |
ttctatatttag |
44684974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 378
Target Start/End: Complemental strand, 42919751 - 42919709
Alignment:
| Q |
336 |
cttatcggattttgagtggtggtcgaatctgatcgtttgaagc |
378 |
Q |
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| T |
42919751 |
cttatcggatgttgagtggtgggcgactctgatcgtttgaagc |
42919709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 266
Target Start/End: Original strand, 29339505 - 29339748
Alignment:
| Q |
30 |
tcattcctgatgcagaattgttgccaacggttgtagtcaatgccaagctctcaagagaagagaaacatg---------atgaagagaacattattggact |
120 |
Q |
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|||||||||||||||| |||||||||| ||||| | ||||||||| |||||| ||||||||| ||||| |||||||| |||||| | |||| |
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| T |
29339505 |
tcattcctgatgcagagatgttgccaacagttgttggcaatgccaaactctcaggagaagagagacatgcaaatattcatgaagaggacattaatagact |
29339604 |
T |
|
| Q |
121 |
tacaaaccttgatgtcacgaagtccataggtgaaacagatgccaatttggatgcagtaattgctcactatgctcagactataaccatgtacaacatgcgt |
220 |
Q |
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||| ||| ||| | |||| | | ||| |||||||| ||||||||||| |||||||||||| ||||||||| ||||||||| || ||||||| |||| |
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| T |
29339605 |
taccaacattgctatcacacaatgcattggtgaaactgatgccaatttagatgcagtaattactcactatgtggagactataaacaagtacaacttgcgc |
29339704 |
T |
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| Q |
221 |
aacttaggtaggcttttggtgcttcatatttttctatctttagata |
266 |
Q |
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||||||||| || ||||| ||||| ||||||||||||||||||| |
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| T |
29339705 |
aacttaggtgggtttttgatgctt--gatttttctatctttagata |
29339748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 29352667 - 29352903
Alignment:
| Q |
30 |
tcattcctgatgcagaattgttgccaacggttgtagtcaatgccaagctctcaagagaagagaaacatg---------atgaagagaacattattggact |
120 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| | || |||||| |||||| |||||||| ||||| |||||||| |||||| | |||| |
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| T |
29352667 |
tcattcctgatgcagagatgttgccaacagttgttggcattgccaaactctcagaagaagagagacatgcaaatattcatgaagaggacattaatagact |
29352766 |
T |
|
| Q |
121 |
tacaaaccttgatgtcacgaagtccataggtgaaacagatgccaatttggatgcagtaattgctcactatgctcagactataaccatgtacaacatgcgt |
220 |
Q |
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||| ||| ||| | |||| | | ||| |||||||| ||||||||||| |||||||||||||||||||||| ||||||||| || |||||| || || |
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| T |
29352767 |
taccaacattgctatcacacaatgcattggtgaaactgatgccaatttagatgcagtaattgctcactatgtggagactataaacaaatacaacttgtgt |
29352866 |
T |
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| Q |
221 |
aacttaggtaggcttttggtgcttcatatttttctat |
257 |
Q |
| |
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|||||||||||| ||||| ||||| || ||| ||||| |
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| T |
29352867 |
aacttaggtaggtttttgatgcttgatttttctctat |
29352903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 379
Target Start/End: Original strand, 1799254 - 1799287
Alignment:
| Q |
346 |
tttgagtggtggtcgaatctgatcgtttgaagca |
379 |
Q |
| |
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||||||||||||||||| |||||||||||||||| |
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| T |
1799254 |
tttgagtggtggtcgaagctgatcgtttgaagca |
1799287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 1918454 - 1918498
Alignment:
| Q |
333 |
tgacttatcggattttgagtggtggtcgaatctgatcgtttgaag |
377 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
1918454 |
tgacatatcggatgttgagtggtggtcgaatctgatcgtttgaag |
1918498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 378
Target Start/End: Original strand, 18580 - 18622
Alignment:
| Q |
336 |
cttatcggattttgagtggtggtcgaatctgatcgtttgaagc |
378 |
Q |
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|||||||||| ||||||||||| ||| |||||||||||||||| |
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| T |
18580 |
cttatcggatgttgagtggtgggcgactctgatcgtttgaagc |
18622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 379
Target Start/End: Original strand, 23264820 - 23264849
Alignment:
| Q |
350 |
agtggtggtcgaatctgatcgtttgaagca |
379 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
23264820 |
agtggtggtcgaatctgatcgtttgaagca |
23264849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 379
Target Start/End: Original strand, 36796715 - 36796747
Alignment:
| Q |
347 |
ttgagtggtggtcgaatctgatcgtttgaagca |
379 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
36796715 |
ttgagtggtggtcgcatctgatcgtttgaagca |
36796747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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