View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20508_high_6 (Length: 300)
Name: NF20508_high_6
Description: NF20508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20508_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 61 - 278
Target Start/End: Complemental strand, 35789873 - 35789656
Alignment:
| Q |
61 |
aatagaagtcaagaaatatatgtgtctgcatcccaatgtgataaactgggacgattctgctgtcaaagaggcattcaacaatgcaaaaaacaggttctgg |
160 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35789873 |
aatagaagtcaagaaatatatgtgtctacatcccaatgtggtaaactgggacgattctgccgtcaaagaggcattcaacaatgcaaaaaacaggttctgg |
35789774 |
T |
|
| Q |
161 |
gctgagatcaacgacattccctgcgacataccatcgcctgatcctaacatttacatagatgatatagactggaacgcaagcgtcaacactgaactttatc |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35789773 |
gctgagatcaacgacattccctgcgacataccatcgcctgatcctaacatttacatagatgatatagactggaacgcaagcgtcgacactgaactttatc |
35789674 |
T |
|
| Q |
261 |
tggatgtggaaagtgaag |
278 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
35789673 |
tggatgtggaaagagaag |
35789656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 61 - 286
Target Start/End: Complemental strand, 35761083 - 35760858
Alignment:
| Q |
61 |
aatagaagtcaagaaatatatgtgtctgcatcccaatgtgataaactgggacgattctgctgtcaaagaggcattcaacaatgcaaaaaacaggttctgg |
160 |
Q |
| |
|
|||||||| |||||| ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||| || ||| |
|
|
| T |
35761083 |
aatagaaggcaagaagtatatgtatctgcatcccaatgtggtaaactgggacgactctgctgtcaaagaggcatttgacaatgcaaaaaacagattttgg |
35760984 |
T |
|
| Q |
161 |
gctgagatcaacgacattccctgcgacataccatcgcctgatcctaacatttacatagatgatatagactggaacgcaagcgtcaacactgaactttatc |
260 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||| ||| | |||| |||||| |||| ||||| ||||| || || |||||||||||| |
|
|
| T |
35760983 |
gctgagatcaacgaatttccctgcgacataccattgcctgatcccgacactcacattgatgatgtagattggaatgcaagtgtggaccctgaactttatc |
35760884 |
T |
|
| Q |
261 |
tggatgtggaaagtgaagcaaaggcc |
286 |
Q |
| |
|
|||||||||||| |||||| ||||| |
|
|
| T |
35760883 |
aggatgtggaaagagaagcagaggcc |
35760858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 61 - 280
Target Start/End: Complemental strand, 35755925 - 35755706
Alignment:
| Q |
61 |
aatagaagtcaagaaatatatgtgtctgcatcccaatgtgataaactgggacgattctgctgtcaaagaggcattcaacaatgcaaaaaacaggttctgg |
160 |
Q |
| |
|
|||||||||||||| ||||||| ||| |||||||||||| |||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
35755925 |
aatagaagtcaagaggtatatgtctctacatcccaatgtggtaaactgggatgactctgctgtaaaagaggcattcaacaatgcaaaaaacaggttttgg |
35755826 |
T |
|
| Q |
161 |
gctgagatcaacgacattccctgcgacataccatcgcctgatcctaacatttacatagatgatatagactggaacgcaagcgtcaacactgaactttatc |
260 |
Q |
| |
|
||||||||||||| | ||||||| |||||||||| ||||||||||||||| ||| | |||||| |||| ||||| |||| | | ||||||| |||| |
|
|
| T |
35755825 |
gctgagatcaacggccttccctgtgacataccattgcctgatcctaacatatacctcgatgatgtagattggaatgcaactattgatcctgaactatatc |
35755726 |
T |
|
| Q |
261 |
tggatgtggaaagtgaagca |
280 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
35755725 |
tggatgtggaaagagaagca |
35755706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 61 - 300
Target Start/End: Complemental strand, 35766566 - 35766327
Alignment:
| Q |
61 |
aatagaagtcaagaaatatatgtgtctgcatcccaatgtgataaactgggacgattctgctgtcaaagaggcattcaacaatgcaaaaaacaggttctgg |
160 |
Q |
| |
|
|||||||| ||||| | ||||| ||||||||| | ||||| ||||||||||| ||||||||||||||||||||| ||||||| || |||||||| ||| |
|
|
| T |
35766566 |
aatagaaggcaagaggtttatgtttctgcatccaacagtgatcaactgggacgactctgctgtcaaagaggcattcgacaatgctaagaacaggttttgg |
35766467 |
T |
|
| Q |
161 |
gctgagatcaacgacattccctgcgacataccatcgcctgatcctaacatttacatagatgatatagactggaacgcaagcgtcaacactgaactttatc |
260 |
Q |
| |
|
||||| ||||||| | |||||||||||||||||| |||||||||||||||| |||| || ||| | || | | |||||| ||| || || ||||||||| |
|
|
| T |
35766466 |
gctgatatcaacggctttccctgcgacataccattgcctgatcctaacattcacatcgacgatgtggattcaaccgcaagtgtcgaccctcaactttatc |
35766367 |
T |
|
| Q |
261 |
tggatgtggaaagtgaagcaaaggccagtgacaacatgga |
300 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35766366 |
ttgatgtggaaagtgaagcagaggccagtgacaacatgga |
35766327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 61 - 286
Target Start/End: Complemental strand, 35786021 - 35785796
Alignment:
| Q |
61 |
aatagaagtcaagaaatatatgtgtctgcatcccaatgtgataaactgggacgattctgctgtcaaagaggcattcaacaatgcaaaaaacaggttctgg |
160 |
Q |
| |
|
|||||||| ||| || ||||||||||| || ||||| ||| |||||||| |||| |||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
35786021 |
aatagaaggcaataagtatatgtgtcttcaccccaaagtggtaaactggaacgactctgctgtcaaagaggcatttgacaatgcaaaaaacaggttttgg |
35785922 |
T |
|
| Q |
161 |
gctgagatcaacgacattccctgcgacataccatcgcctgatcctaacatttacatagatgatatagactggaacgcaagcgtcaacactgaactttatc |
260 |
Q |
| |
|
||||||||||||| | |||||||| ||||||||| ||||||||||||||||||||| || ||| |||| ||||| ||||| | || ||||||||||| |
|
|
| T |
35785921 |
gctgagatcaacggccttccctgcaacataccattgcctgatcctaacatttacatcgacgatgtagattggaatgcaagtattgactctgaactttatt |
35785822 |
T |
|
| Q |
261 |
tggatgtggaaagtgaagcaaaggcc |
286 |
Q |
| |
|
|||| |||||||| |||||| ||||| |
|
|
| T |
35785821 |
tggaggtggaaagagaagcagaggcc |
35785796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 61 - 286
Target Start/End: Complemental strand, 35799516 - 35799291
Alignment:
| Q |
61 |
aatagaagtcaagaaatatatgtgtctgcatcccaatgtgataaactgggacgattctgctgtcaaagaggcattcaacaatgcaaaaaacaggttctgg |
160 |
Q |
| |
|
|||||||| ||||| || |||| | |||||||||| ||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
35799516 |
aatagaagacaagaggtacatgtatatgcatcccaaagtggtaaactgggacgactctgctgtcaaagaggcattcgacaatgcaaaaaacaggtattgg |
35799417 |
T |
|
| Q |
161 |
gctgagatcaacgacattccctgcgacataccatcgcctgatcctaacatttacatagatgatatagactggaacgcaagcgtcaacactgaactttatc |
260 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||| ||| ||||||||||||||||||||||| |||| | || ||||| ||| | |||||||| ||| |
|
|
| T |
35799416 |
gctgagatcaacggcattccctgggacataccattgcccaatcctaacatttacatagatgatgtagattcaaatgcaagtgtcgattctgaacttcatc |
35799317 |
T |
|
| Q |
261 |
tggatgtggaaagtgaagcaaaggcc |
286 |
Q |
| |
|
||||||||||| |||||| ||||| |
|
|
| T |
35799316 |
gggatgtggaaatagaagcagaggcc |
35799291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 35789909 - 35789975
Alignment:
| Q |
1 |
aaacttcttttcccacaaaggcactgttggtaaccaattatctgttagcaaaaaagaataaatagaa |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35789909 |
aaacttcttttcccacaaaggcactgttggtaaccaattatctgttagcaaaaaagaataaatagaa |
35789975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 35761119 - 35761185
Alignment:
| Q |
1 |
aaacttcttttcccacaaaggcactgttggtaaccaattatctgttagcaaaaaagaataaatagaa |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||| | | |||| |||||||||||| |
|
|
| T |
35761119 |
aaacttcttttcccacaaaggcactgttggaaacctattatctgcgaaccaaaaggaataaatagaa |
35761185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 35799552 - 35799617
Alignment:
| Q |
1 |
aaacttcttttcccacaaaggcactgttggtaaccaattatctgttagcaaaaaagaataaatagaa |
67 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||| ||||||||| | | |||||||||||||||| |
|
|
| T |
35799552 |
aaactgcttttcccacaaaggcactgttggaaacctattatctgtgaac-caaaagaataaatagaa |
35799617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35786057 - 35786101
Alignment:
| Q |
1 |
aaacttcttttcccacaaaggcactgttggtaaccaattatctgt |
45 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||| |||| |||| |
|
|
| T |
35786057 |
aaacttcttttcccacgaaggcactgttggaaacctattagctgt |
35786101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University