View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20508_low_1 (Length: 499)

Name: NF20508_low_1
Description: NF20508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20508_low_1
NF20508_low_1
[»] chr4 (17 HSPs)
chr4 (130-282)||(4901220-4901370)
chr4 (321-400)||(4901367-4901446)
chr4 (131-272)||(42884831-42884971)
chr4 (186-281)||(13385753-13385847)
chr4 (194-277)||(42884979-42885062)
chr4 (169-299)||(24831021-24831152)
chr4 (194-358)||(47786250-47786413)
chr4 (194-259)||(23996413-23996478)
chr4 (322-370)||(40491730-40491778)
chr4 (7-49)||(4901097-4901139)
chr4 (183-264)||(51573417-51573498)
chr4 (183-254)||(15478194-15478265)
chr4 (149-225)||(7017036-7017112)
chr4 (149-225)||(34042027-34042103)
chr4 (151-225)||(8434528-8434602)
chr4 (183-235)||(15450508-15450560)
chr4 (149-181)||(40492642-40492674)
[»] chr2 (8 HSPs)
chr2 (131-300)||(10862935-10863105)
chr2 (209-304)||(19494462-19494557)
chr2 (194-299)||(36911289-36911395)
chr2 (152-400)||(34237648-34237899)
chr2 (202-257)||(9792245-9792300)
chr2 (131-299)||(13293753-13293921)
chr2 (324-401)||(16242192-16242269)
chr2 (136-225)||(3670822-3670911)
[»] chr1 (19 HSPs)
chr1 (131-281)||(46835168-46835318)
chr1 (131-259)||(27055662-27055790)
chr1 (131-265)||(12458407-12458541)
chr1 (131-258)||(35760435-35760562)
chr1 (149-299)||(36017942-36018094)
chr1 (154-299)||(32708928-32709072)
chr1 (149-243)||(3979649-3979743)
chr1 (180-298)||(26213941-26214060)
chr1 (194-259)||(46435395-46435460)
chr1 (208-281)||(27787399-27787472)
chr1 (245-299)||(508628-508683)
chr1 (210-281)||(27413712-27413785)
chr1 (170-238)||(42435420-42435488)
chr1 (214-259)||(29119281-29119326)
chr1 (149-192)||(36018238-36018281)
chr1 (131-201)||(46435638-46435708)
chr1 (247-299)||(13413987-13414040)
chr1 (149-225)||(13414064-13414140)
chr1 (202-238)||(25485607-25485643)
[»] chr8 (10 HSPs)
chr8 (131-259)||(3469191-3469319)
chr8 (131-281)||(30805920-30806070)
chr8 (131-259)||(42906801-42906929)
chr8 (162-238)||(1271270-1271346)
chr8 (245-299)||(8624997-8625052)
chr8 (245-299)||(4203200-4203255)
chr8 (150-256)||(6148809-6148915)
chr8 (184-265)||(34347434-34347515)
chr8 (173-225)||(4203126-4203178)
chr8 (149-225)||(8624899-8624975)
[»] scaffold0002 (1 HSPs)
scaffold0002 (155-299)||(452850-452995)
[»] chr5 (13 HSPs)
chr5 (134-259)||(14148892-14149017)
chr5 (131-259)||(18014414-18014542)
chr5 (131-297)||(26637553-26637720)
chr5 (131-268)||(10142190-10142327)
chr5 (150-265)||(10142796-10142911)
chr5 (150-257)||(39058055-39058162)
chr5 (151-299)||(36896625-36896774)
chr5 (209-300)||(574120-574212)
chr5 (149-265)||(18934545-18934661)
chr5 (170-281)||(4927558-4927669)
chr5 (209-280)||(6114594-6114664)
chr5 (162-230)||(24073570-24073638)
chr5 (150-220)||(15145484-15145554)
[»] chr7 (11 HSPs)
chr7 (150-299)||(9158738-9158888)
chr7 (144-281)||(2658519-2658655)
chr7 (136-279)||(23657301-23657444)
chr7 (183-281)||(7571033-7571131)
chr7 (183-281)||(7577448-7577546)
chr7 (183-281)||(7579810-7579908)
chr7 (175-299)||(1398146-1398273)
chr7 (156-266)||(26456415-26456523)
chr7 (152-256)||(43439663-43439765)
chr7 (149-216)||(33473429-33473496)
chr7 (170-231)||(30953094-30953156)
[»] chr3 (14 HSPs)
chr3 (150-280)||(9012107-9012237)
chr3 (131-259)||(93358-93486)
chr3 (131-263)||(27065238-27065370)
chr3 (150-259)||(30991615-30991724)
chr3 (183-277)||(4968450-4968544)
chr3 (136-265)||(25147631-25147760)
chr3 (194-265)||(25891332-25891403)
chr3 (162-243)||(27079860-27079941)
chr3 (207-281)||(49080814-49080889)
chr3 (245-299)||(6515340-6515395)
chr3 (324-401)||(30860493-30860570)
chr3 (152-225)||(6515245-6515318)
chr3 (144-192)||(27065542-27065590)
chr3 (149-225)||(34948175-34948251)
[»] scaffold0538 (2 HSPs)
scaffold0538 (184-280)||(8467-8562)
scaffold0538 (189-299)||(3982-4092)
[»] chr6 (6 HSPs)
chr6 (211-299)||(33483497-33483586)
chr6 (184-306)||(31730441-31730563)
chr6 (183-263)||(24081669-24081750)
chr6 (202-277)||(20240103-20240178)
chr6 (202-277)||(22134087-22134162)
chr6 (202-277)||(22141440-22141515)
[»] scaffold0193 (1 HSPs)
scaffold0193 (131-281)||(22837-22986)
[»] scaffold0778 (1 HSPs)
scaffold0778 (187-298)||(3279-3391)
[»] scaffold0006 (2 HSPs)
scaffold0006 (149-225)||(280600-280676)
scaffold0006 (245-296)||(280526-280578)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 130 - 282
Target Start/End: Original strand, 4901220 - 4901370
Alignment:
Q  130 ggtaaattagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaa 229  Q
    ||||||||||||| |||||||||||||||  ||||||| ||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  4901220 ggtaaattagcaaattatccccacctaaa--cattaacatgtaaattagcaatctacacccacgtaattatgtacattcatttttataagttttatcaaa 4901317  T
Q  230 ttgtttacatccacctcactaatttacactcacttttattatttcaaatattt 282  Q
    || ||||||| ||||| |||||||||||| |||| | || |||||||||||||    
T  4901318 ttatttacattcaccttactaatttacacccactctcatcatttcaaatattt 4901370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 321 - 400
Target Start/End: Original strand, 4901367 - 4901446
Alignment:
Q  321 atttaattacactagcttgtatttacactaattccttaatattcttcccagttcaatccttttaaaataagccaacatct 400  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4901367 atttaattacactaacttgtatttacactaattccttaatattcttcccagttcaatccttttaaaataaggcaacatct 4901446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 131 - 272
Target Start/End: Original strand, 42884831 - 42884971
Alignment:
Q  131 gtaaattagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaat 230  Q
    |||||||||||| |||  ||||||||||| |||||| |||||  |||||||||||||| ||| |||| || |||| |||||||||| ||||||||| |||    
T  42884831 gtaaattagcaaattacacccacctaaaatcattaaggtgtatgttaacaatctacactcacttgatgatttacactcatttttatcagttttatccaat 42884930  T
Q  231 tgtttacatccacctcactaatttacactcacttttattatt 272  Q
    || ||||| |||||||||||||||| || |||||||||||||    
T  42884931 tggttacacccacctcactaatttatac-cacttttattatt 42884971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 186 - 281
Target Start/End: Original strand, 13385753 - 13385847
Alignment:
Q  186 cacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaatatt 281  Q
    ||||||| ||||||| |||| |||| |||||||||||||||||||||||||||  ||||||||||||||||| |||| ||||| ||||||||||||    
T  13385753 cacccacttgattatttacactcatgtttataagttttatcaaattgtttacactcacctcactaatttacattcac-tttatcatttcaaatatt 13385847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 194 - 277
Target Start/End: Original strand, 42884979 - 42885062
Alignment:
Q  194 tgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaa 277  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||| |||||| ||||    
T  42884979 tgattatttacgctcatttttataagttttatcaaattgtttacactcacctcactaatttacacccactttcattattccaaa 42885062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 169 - 299
Target Start/End: Complemental strand, 24831152 - 24831021
Alignment:
Q  169 tgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttat 268  Q
    ||||| ||| ||| ||||| |||| ||||||| |||| |||||||||||| ||| || |||||||||||| |||||  |||||||||||| |||||| ||    
T  24831152 tgtaagttagcaacctacatccacttgattatatacactcatttttataaatttgattaaattgtttacacccaccatactaatttacacacactttcat 24831053  T
Q  269 tatttcaaatatt-tttccttcaaagtttgtc 299  Q
      || |||||||| ||||||| ||||||||||    
T  24831052 cgttccaaatattgtttccttaaaagtttgtc 24831021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 194 - 358
Target Start/End: Complemental strand, 47786413 - 47786250
Alignment:
Q  194 tgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaatatt-tttccttcaaa 292  Q
    ||||||| ||||||  |||||||||||||||||||| | |||||   |||||||||||||||||  ||  ||||| |||||||||||| |||| || |||    
T  47786413 tgattatttacattagtttttataagttttatcaaaatatttactctcacctcactaatttacatccatctttatcatttcaaatattgtttctttaaaa 47786314  T
Q  293 gtttgtcccacctttgtactnnnnnnncatttaattacactagcttgtatttacactaattcctta 358  Q
    |||||| ||||| || ||||       ||| ||||| |||||||||||||||||||||||||||||    
T  47786313 gtttgttccacc-ttatact-agaaaacatgtaattgcactagcttgtatttacactaattcctta 47786250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 23996413 - 23996478
Alignment:
Q  194 tgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatttacact 259  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||| |||||| |||||||||||||    
T  23996413 tgattatatacactcatttttataaattttatcaaattgtttacaaccaccttactaatttacact 23996478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 370
Target Start/End: Complemental strand, 40491778 - 40491730
Alignment:
Q  322 tttaattacactagcttgtatttacactaattccttaatattcttccca 370  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40491778 tttaattacactagcttgtatttacactaattccttaatattgttccca 40491730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 4901097 - 4901139
Alignment:
Q  7 aattgcatatttaagcctttagtgaaatttaactttttactta 49  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4901097 aattgcatatttaagcctttagtgaaatttaactttttactta 4901139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 51573417 - 51573498
Alignment:
Q  183 ctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcactt 264  Q
    |||||||||| ||||||| |||| |||||||||||| ||||   ||||  |||||| ||||||||||||||||||| |||||    
T  51573417 ctacacccacttgattatttacactcatttttataacttttgataaataatttacacccacctcactaatttacacccactt 51573498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 183 - 254
Target Start/End: Complemental strand, 15478265 - 15478194
Alignment:
Q  183 ctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaattt 254  Q
    ||||| |||| |||||||||||| |||||||||||| |||||| ||||| ||||||   |||||||||||||    
T  15478265 ctacatccacttgattatgtacactcatttttataaattttataaaattctttacacaaacctcactaattt 15478194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 7017036 - 7017112
Alignment:
Q  149 cccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttat 225  Q
    |||||||||||||| ||| ||| || ||| ||| |||||| ||| ||||||| |||| |||||||||||||| ||||    
T  7017036 cccacctaaaaacactaaggtgcaagttagcaacctacactcacttgattatttacactcatttttataagtattat 7017112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 34042103 - 34042027
Alignment:
Q  149 cccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttat 225  Q
    |||||||||||||| ||| ||| || ||| ||| ||||| |||| ||||||| |||| |||||||||||||| ||||    
T  34042103 cccacctaaaaacactaaggtgcaagttagcaacctacatccacttgattatttacactcatttttataagtattat 34042027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 8434602 - 8434528
Alignment:
Q  151 cacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttat 225  Q
    |||||||||||| ||| ||| || ||| ||  |||||||||| ||||||| |||| |||||||||||||| ||||    
T  8434602 cacctaaaaacactaaggtgcaagttagcatcctacacccacttgattatttacactcatttttataagtattat 8434528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 15450560 - 15450508
Alignment:
Q  183 ctacacccacatgattatgtacattcatttttataagttttatcaaattgttt 235  Q
    ||||| |||| ||||||||||||  ||||||||||| |||||| |||||||||    
T  15450560 ctacatccacttgattatgtacacacatttttataaattttataaaattgttt 15450508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 181
Target Start/End: Complemental strand, 40492674 - 40492642
Alignment:
Q  149 cccacctaaaaacattaacgtgtaaattaacaa 181  Q
    ||||| |||||||||||||||||||||||||||    
T  40492674 cccacttaaaaacattaacgtgtaaattaacaa 40492642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 131 - 300
Target Start/End: Complemental strand, 10863105 - 10862935
Alignment:
Q  131 gtaaattagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaat 230  Q
    ||||||||||| | ||  ||||||||||||||  || |||||| ||| ||| |||||||||| |||||||||||| |||||||||||| |||||||||||    
T  10863105 gtaaattagcaggctacacccacctaaaaacaccaaggtgtaagttagcaacctacacccacttgattatgtacactcatttttataaattttatcaaat 10863006  T
Q  231 tgtttacatccacctcactaatttacactcacttttattatttcaaatatt-tttccttcaaagtttgtcc 300  Q
    ||||||||  |||||||||||||||||| |||||| || |||||||||||| ||||||| |||||||||||    
T  10863005 tgtttacactcacctcactaatttacacccactttcatcatttcaaatattgtttccttaaaagtttgtcc 10862935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 209 - 304
Target Start/End: Complemental strand, 19494557 - 19494462
Alignment:
Q  209 atttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaatatttttccttcaaagtttgtcccacc 304  Q
    |||||||||||||||||  |||||||||||| |||||||| | ||||||| ||||||||| |||| |||||||||||||| ||||| |||||||||    
T  19494557 atttttataagttttatgtaattgtttacattcacctcacaagtttacacccacttttataattttaaatatttttccttaaaagtctgtcccacc 19494462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 194 - 299
Target Start/End: Original strand, 36911289 - 36911395
Alignment:
Q  194 tgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaatatt-tttccttcaaa 292  Q
    ||||||| |||| |||||||||||| |||||||||||| ||||||  ||||||||| |||||||| |||||| || |||  ||||||| |||||||||||    
T  36911289 tgattatatacactcatttttataaattttatcaaattttttacactcacctcactgatttacacccactttcatcattcaaaatattgtttccttcaaa 36911388  T
Q  293 gtttgtc 299  Q
    |||||||    
T  36911389 gtttgtc 36911395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 400
Target Start/End: Complemental strand, 34237899 - 34237648
Alignment:
Q  152 acctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaa 251  Q
    ||||||||| | ||| |||||| |||||||| ||| | ||| ||||||| || | | ||||||||||||||||| ||||| |||||| |||||| |||||    
T  34237899 acctaaaaatactaaggtgtaagttaacaatttacgctcacttgattatttataattatttttataagttttattaaattatttacacccaccttactaa 34237800  T
Q  252 tttac-act--cacttttattatttcaaatatt-tttccttcaaagtttgtcccacctttgtactnnnnnnncatttaattacactagcttgtatttaca 347  Q
    || || |||  |||| | || |||| ||||||| ||| ||| ||| | | ||| || || |||||       ||| |||||| |||||| | ||||||||    
T  34237799 ttgacgactttcactctcatcattttaaatattgtttacttaaaaatatatcctacatt-gtactaaaaaaacatgtaattatactagcatatatttaca 34237701  T
Q  348 ctaattccttaatattcttcccagttcaatccttttaaaataagccaacatct 400  Q
    |||||||||||||||| |||||| || |||| |||| |||||| |||||||||    
T  34237700 ctaattccttaatattgttcccaatttaatcatttttaaataaaccaacatct 34237648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 9792300 - 9792245
Alignment:
Q  202 tacattcatttttataagttttatcaaattgtttacatccacctcactaatttaca 257  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  9792300 tacactcatttttataaattttatcaaattgtttacacccacctcactaatttaca 9792245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 299
Target Start/End: Original strand, 13293753 - 13293921
Alignment:
Q  131 gtaaattagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaat 230  Q
    ||||||||| ||| ||  |||||||| ||  ||||| |||||| ||| ||| |||||  ||| ||||||| |||| || ||||||||| |||||||||||    
T  13293753 gtaaattaggaaggtacacccacctataattattaaggtgtaagttagcaacctacattcacttgattatttacactcttttttataaattttatcaaat 13293852  T
Q  231 tgtttacatccacctcactaatttacactcacttttattatttcaaatatt-tttccttcaaagtttgtc 299  Q
    | ||||||   ||||||||||||||||| || |||||| ||| || ||||| ||||||| || |||||||    
T  13293853 t-tttacacatacctcactaatttacacacatttttatcattccagatattgtttccttaaatgtttgtc 13293921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 401
Target Start/End: Complemental strand, 16242269 - 16242192
Alignment:
Q  324 taattacactagcttgtatttacactaattccttaatattcttcccagttcaatccttttaaaataagccaacatctt 401  Q
    |||||| |||| ||||||||||||| |||||||| |||||  |||| ||| || |||||| |||||||||||||||||    
T  16242269 taattaaactaacttgtatttacaccaattccttgatattggtccctgtttaaccctttttaaataagccaacatctt 16242192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 3670911 - 3670822
Alignment:
Q  136 ttagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttat 225  Q
    |||||||||||  ||||||||| |  ||||| ||| || ||| ||| |||||||||| ||||||| |||| | |||||||||||| ||||    
T  3670911 ttagcaagttacacccacctaatattattaaggtgcaagttagcaacctacacccacttgattatttacacttatttttataagtattat 3670822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 131 - 281
Target Start/End: Complemental strand, 46835318 - 46835168
Alignment:
Q  131 gtaaattagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaat 230  Q
    ||||||||||||| ||   ||||||||||| ||||| |||||| ||| |||   |||||||| ||||||| |||| |||||||||||| |||||||||||    
T  46835318 gtaaattagcaagctacatccacctaaaaatattaaggtgtaagttagcaaataacacccacttgattatatacactcatttttataaattttatcaaat 46835219  T
Q  231 tgtttacatccacctcactaatttacactcacttttattatttcaaatatt 281  Q
    |||||||| ||| ||||||||||||||| |||||| || ||||||||||||    
T  46835218 tgtttacacccaactcactaatttacacccactttcatcatttcaaatatt 46835168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 131 - 259
Target Start/End: Original strand, 27055662 - 27055790
Alignment:
Q  131 gtaaattagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaat 230  Q
    ||||||||||||| ||  |||||||||||| | ||| |||||| ||| ||| |||||||||| ||||||| |||| |||||||||||| |||||||||||    
T  27055662 gtaaattagcaagctacacccacctaaaaatactaaggtgtaagttagcaacctacacccacttgattatatacactcatttttataaattttatcaaat 27055761  T
Q  231 tgtttacatccacctcactaatttacact 259  Q
    |||||||| |||||| |||||||||||||    
T  27055762 tgtttacaaccaccttactaatttacact 27055790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 131 - 265
Target Start/End: Complemental strand, 12458541 - 12458407
Alignment:
Q  131 gtaaattagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaat 230  Q
    ||||||||||||||||  ||||||||||| |||||| ||| || ||| |||  ||||||||  ||||||| | || |||||||||||| |||||||||||    
T  12458541 gtaaattagcaagttacacccacctaaaatcattaaggtgcaagttaccaacttacacccatttgattatttgcactcatttttataaattttatcaaat 12458442  T
Q  231 tgtttacatccacctcactaatttacactcacttt 265  Q
    ||||||||  |||||||||||||||||||||||||    
T  12458441 tgtttacacacacctcactaatttacactcacttt 12458407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 131 - 258
Target Start/End: Complemental strand, 35760562 - 35760435
Alignment:
Q  131 gtaaattagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaat 230  Q
    ||||||||||| | ||  |||||||||||| | ||| |||||| ||| ||| |||||||||| ||||||| |||| |||||||||||| |||||||||||    
T  35760562 gtaaattagcatgctacacccacctaaaaatactaaggtgtaagttagcaacctacacccacttgattatatacactcatttttataaattttatcaaat 35760463  T
Q  231 tgtttacatccacctcactaatttacac 258  Q
    |||||||| ||| || ||||||||||||    
T  35760462 tgtttacagccatcttactaatttacac 35760435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 149 - 299
Target Start/End: Original strand, 36017942 - 36018094
Alignment:
Q  149 cccacctaaaaacattaacgtgtaaattaacaa-tctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctca 247  Q
    |||||||||||| | ||| |||||| |||| || | ||||| ||  ||||||| |||| || ||||||||| ||||||||||||||||||| |||| |||    
T  36017942 cccacctaaaaatactaaggtgtaagttaaaaaatatacactcatttgattatatacactcgtttttataaattttatcaaattgtttacacccacttca 36018041  T
Q  248 ctaatttacactcacttttattatttcaaatatt-tttccttcaaagtttgtc 299  Q
    ||||||| ||| ||||||||| |||||||||||| ||||||| ||| ||||||    
T  36018042 ctaatttgcacccacttttatcatttcaaatattgtttccttaaaaatttgtc 36018094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 154 - 299
Target Start/End: Complemental strand, 32709072 - 32708928
Alignment:
Q  154 ctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatt 253  Q
    ||||||||| ||| |||||| ||| |||  |||| |||| ||||||| |||  |||||||||||| |||||||||||||||| ||  |||||||||||||    
T  32709072 ctaaaaacactaaggtgtaagttagcaacatacatccacttgattatatac--tcatttttataaattttatcaaattgtttgcactcacctcactaatt 32708975  T
Q  254 tacactcacttttattatttcaaatatt-tttccttcaaagtttgtc 299  Q
    ||||| |||||| || ||| |||||||| ||| ||| ||||||||||    
T  32708974 tacacccactttcatgattccaaatattattttcttaaaagtttgtc 32708928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 3979649 - 3979743
Alignment:
Q  149 cccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccac 243  Q
    ||||||||||||||||   |||||||||| ||| |||||||||| || |||| |||| |||||||||||| ||||||||||||||||||| ||||    
T  3979649 cccacctaaaaacattttggtgtaaattagcaagctacacccacttggttatatacactcatttttataaattttatcaaattgtttacacccac 3979743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 298
Target Start/End: Original strand, 26213941 - 26214060
Alignment:
Q  180 aatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaata 279  Q
    |||||| |||||  ||||||| |||| | |||||||||| |||||||||||||||||||  ||| |||||||||||||| |||||| || |||| |||||    
T  26213941 aatctatacccatctgattatttacacttatttttataatttttatcaaattgtttacactcacgtcactaatttacacccactttcatcatttaaaata 26214040  T
Q  280 tt-tttccttcaaagtttgt 298  Q
    || ||| ||| |||||||||    
T  26214041 ttattttcttaaaagtttgt 26214060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 46435460 - 46435395
Alignment:
Q  194 tgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatttacact 259  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||| |||||| |||||||||||||    
T  46435460 tgattatatacactcatttttataaattttatcaaattgtttacaaccaccttactaatttacact 46435395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 27787472 - 27787399
Alignment:
Q  208 catttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaatatt 281  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||| ||  |||||| || ||| ||||||||    
T  27787472 catttttataaattttatcaaattgtttacacccacctcactaattttcatccactttcatcattccaaatatt 27787399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 508683 - 508628
Alignment:
Q  245 tcactaatttacactcacttttattatttcaaatatt-tttccttcaaagtttgtc 299  Q
    |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  508683 tcactaatttacactcacttttatcatttcaaatattgtttccttaaaagtttgtc 508628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 27413712 - 27413785
Alignment:
Q  210 tttttataagttttatcaaattgtttacatccacctcacta--atttacactcacttttattatttcaaatatt 281  Q
    ||||||||| |||||||||||| ||||||  ||||||||||  ||||||||||||||| || ||||||||||||    
T  27413712 tttttataaattttatcaaattatttacactcacctcactaatatttacactcactttcatcatttcaaatatt 27413785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 42435420 - 42435488
Alignment:
Q  170 gtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttaca 238  Q
    |||| ||| ||| |||||||||| ||||||| |||||||| |||||||| |||||||||||| ||||||    
T  42435420 gtaagttagcaacctacacccacgtgattatttacattcacttttataatttttatcaaattatttaca 42435488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 29119326 - 29119281
Alignment:
Q  214 tataagttttatcaaattgtttacatccacctcactaatttacact 259  Q
    ||||| ||||||||||||||||||| |||||| |||||||||||||    
T  29119326 tataaattttatcaaattgtttacaaccaccttactaatttacact 29119281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 36018281 - 36018238
Alignment:
Q  149 cccacctaaaaacattaacgtgtaaattaacaatctacacccac 192  Q
    ||||| |||||||| |||||||||||||||||| ||||||||||    
T  36018281 cccacttaaaaacactaacgtgtaaattaacaaactacacccac 36018238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 46435708 - 46435638
Alignment:
Q  131 gtaaattagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatg 201  Q
    ||||||||||||| ||  |||||||||||| | ||| |||||| ||| ||| |||||||||| ||||||||    
T  46435708 gtaaattagcaagctacacccacctaaaaatactaaggtgtaagttagcaacctacacccacttgattatg 46435638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 13414040 - 13413987
Alignment:
Q  247 actaatttacactcacttttattatttcaaatatt-tttccttcaaagtttgtc 299  Q
    |||||||||||| |||||| || |||||||||||| ||||||| ||||||||||    
T  13414040 actaatttacacccactttcatcatttcaaatattgtttccttaaaagtttgtc 13413987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 13414140 - 13414064
Alignment:
Q  149 cccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttat 225  Q
    ||||||| |||  ||||| |||||||||| |||  ||||||||| | ||||| ||||||| ||||||||||| ||||    
T  13414140 cccaccttaaattattaaggtgtaaattagcaacatacacccactttattatttacattcgtttttataagtattat 13414064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 25485643 - 25485607
Alignment:
Q  202 tacattcatttttataagttttatcaaattgtttaca 238  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  25485643 tacattcatttttagaagttttatcaaattatttaca 25485607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 131 - 259
Target Start/End: Complemental strand, 3469319 - 3469191
Alignment:
Q  131 gtaaattagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaat 230  Q
    ||||||||||||| ||  |||||||||||| | ||| |||||| ||| ||| |||||||||| ||||||| |||| |||||||||||| |||||||||||    
T  3469319 gtaaattagcaagctacacccacctaaaaatactaaggtgtaagttagcaacctacacccacttgattatatacactcatttttataaattttatcaaat 3469220  T
Q  231 tgtttacatccacctcactaatttacact 259  Q
    |||||||| |||||| |||||||||||||    
T  3469219 tgtttacaaccaccttactaatttacact 3469191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 131 - 281
Target Start/End: Original strand, 30805920 - 30806070
Alignment:
Q  131 gtaaattagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaat 230  Q
    |||||||||||| ||   |||||||| || |||||| |||||| ||| ||| ||||| |||| ||||||| |||| |||||||||||| |||||||||||    
T  30805920 gtaaattagcaaattccacccacctagaatcattaaagtgtaagttagcaacctacatccacttgattatttacactcatttttataaattttatcaaat 30806019  T
Q  231 tgtttacatccacctcactaatttacactcacttttattatttcaaatatt 281  Q
    | |||||| | | |||||||||||||||||||||| || ||| ||||||||    
T  30806020 tatttacacctatctcactaatttacactcactttcatcattccaaatatt 30806070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 131 - 259
Target Start/End: Original strand, 42906801 - 42906929
Alignment:
Q  131 gtaaattagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaat 230  Q
    ||||||||| ||| ||  |||||||||||| | ||| |||||| ||| ||| |||||||||| ||||||| |||| |||||||||||| |||||||||||    
T  42906801 gtaaattagtaagctacacccacctaaaaatactaaggtgtaagttagcaacctacacccacttgattatatacactcatttttataaattttatcaaat 42906900  T
Q  231 tgtttacatccacctcactaatttacact 259  Q
    ||||| || |||||| |||||||||||||    
T  42906901 tgtttgcaaccaccttactaatttacact 42906929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 1271270 - 1271346
Alignment:
Q  162 attaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttaca 238  Q
    ||||| ||| || ||||||| ||| ||||||  |||||| |||| ||||||||||||||||||||||||||||||||    
T  1271270 attaaggtgcaagttaacaacctatacccactagattatttacactcatttttataagttttatcaaattgtttaca 1271346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 8624997 - 8625052
Alignment:
Q  245 tcactaatttacactcacttttattatttcaaatatt-tttccttcaaagtttgtc 299  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||| ||||||||||    
T  8624997 tcactaatttacactcactttcattattccaaatattgtttccttaaaagtttgtc 8625052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 4203200 - 4203255
Alignment:
Q  245 tcactaatttacactcacttttattatttcaaatatt-tttccttcaaagtttgtc 299  Q
    |||||||||||||| |||||| || |||||||||||| ||||||| ||||||||||    
T  4203200 tcactaatttacacccactttcatcatttcaaatattgtttccttaaaagtttgtc 4203255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 6148809 - 6148915
Alignment:
Q  150 ccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcact 249  Q
    |||||||| | |||||| |||||| ||| |||  ||||||||| ||| ||| |  | |||||||| ||||||||||| ||||||||||| | | |||||     
T  6148809 ccacctaagatcattaaggtgtaagttagcaacttacacccacttgaatatttttactcatttttgtaagttttatctaattgtttacacctatctcaca 6148908  T
Q  250 aatttac 256  Q
    |||||||    
T  6148909 aatttac 6148915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 265
Target Start/End: Original strand, 34347434 - 34347515
Alignment:
Q  184 tacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcacttt 265  Q
    ||||||||  || |||| |||| | |||||||||| ||||||||||||||||| |  || || |||||||||||| ||||||    
T  34347434 tacacccagttggttatatacacttatttttataaattttatcaaattgtttaaactcatcttactaatttacacccacttt 34347515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 4203126 - 4203178
Alignment:
Q  173 aattaacaatctacacccacatgattatgtacattcatttttataagttttat 225  Q
    ||||| ||| |||||||||| ||||||| |||| |||||||||||||| ||||    
T  4203126 aattagcaacctacacccacttgattatttacactcatttttataagtattat 4203178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 8624899 - 8624975
Alignment:
Q  149 cccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttat 225  Q
    ||||| |||||  ||||| ||| |||||| ||  |||||||||| ||||||| |||| |||||||||||||| ||||    
T  8624899 cccacataaaattattaaggtgcaaattagcatcctacacccacttgattatttacactcatttttataagtattat 8624975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 155 - 299
Target Start/End: Complemental strand, 452995 - 452850
Alignment:
Q  155 taaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaattt 254  Q
    |||||||| ||| || |||||||  ||||||||||||| ||||||| || | |||||||||||| ||||||||||||||||||| |||||||||||||||    
T  452995 taaaaacaataaggtttaaattagaaatctacacccacttgattatataaactcatttttataaattttatcaaattgtttacacccacctcactaattt 452896  T
Q  255 acactcacttttattatttcaaatatt-tttccttcaaagtttgtc 299  Q
    | || || ||| || ||| |||||||| ||||||| ||||||||||    
T  452895 aaacccattttcatcattccaaatattgtttccttaaaagtttgtc 452850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 134 - 259
Target Start/End: Original strand, 14148892 - 14149017
Alignment:
Q  134 aattagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgt 233  Q
    |||||||||| ||  |||||||||||| | ||| |||||| ||| ||| |||||||||| ||||||| |||| |||||||||||| ||||||||||||||    
T  14148892 aattagcaagctacacccacctaaaaatactaaggtgtaagttagcaacctacacccacttgattatatacactcatttttataaattttatcaaattgt 14148991  T
Q  234 ttacatccacctcactaatttacact 259  Q
    ||||| |||||| |||||||||||||    
T  14148992 ttacaaccaccttactaatttacact 14149017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 131 - 259
Target Start/End: Complemental strand, 18014542 - 18014414
Alignment:
Q  131 gtaaattagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaat 230  Q
    ||||||||||||| ||  |||||||||||| | ||| |||||| ||| ||| |||||||||| ||||||| |||||| |||||||||| |||||||||||    
T  18014542 gtaaattagcaagctacacccacctaaaaatactaaggtgtaagttagcaacctacacccacttgattatatacatttatttttataaattttatcaaat 18014443  T
Q  231 tgtttacatccacctcactaatttacact 259  Q
    |||||||| ||| || |||||||||||||    
T  18014442 tgtttacaaccatcttactaatttacact 18014414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 131 - 297
Target Start/End: Complemental strand, 26637720 - 26637553
Alignment:
Q  131 gtaaattagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaat 230  Q
    ||||||||||||||||  |||| ||||||| | ||| ||| || |||  || |||||||||| ||||||| || | |||||||||||| ||||| |||||    
T  26637720 gtaaattagcaagttacacccaactaaaaatactaaggtgcaagttagtaacctacacccacttgattatttatactcatttttataaattttaacaaat 26637621  T
Q  231 tgtttacatccacctcactaatttacactcacttttattatttcaaatatt-tttccttcaaagtttg 297  Q
    ||||||||  |||||||||||||||||| |||||| || |||||||||||| ||| ||| ||||||||    
T  26637620 tgtttacactcacctcactaatttacacccactttcatcatttcaaatattgtttacttaaaagtttg 26637553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 10142190 - 10142327
Alignment:
Q  131 gtaaattagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaat 230  Q
    ||||||||||||| ||  ||||| ||||| |||||| |||||| ||| ||| ||||||| || ||||||| |||| |  |||||||||||||||| ||||    
T  10142190 gtaaattagcaagctacacccacttaaaatcattaaggtgtaagttagcaacctacacctacttgattatttacactattttttataagttttatgaaat 10142289  T
Q  231 tgtttacatccacctcactaatttacactcacttttat 268  Q
    | |||||| |||||||| ||||||||||||||||||||    
T  10142290 tttttacacccacctcaataatttacactcacttttat 10142327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 150 - 265
Target Start/End: Complemental strand, 10142911 - 10142796
Alignment:
Q  150 ccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcact 249  Q
    |||| ||||| |||||| |||||| ||||||| |||||||||| ||||||| |||| |  |||||||||||||||||||||||||| ||   ||||||||    
T  10142911 ccacttaaaatcattaaggtgtaagttaacaacctacacccacttgattatttacactattttttataagttttatcaaattgtttgcacatacctcact 10142812  T
Q  250 aatttacactcacttt 265  Q
    ||||||||| ||||||    
T  10142811 aatttacacccacttt 10142796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 150 - 257
Target Start/End: Complemental strand, 39058162 - 39058055
Alignment:
Q  150 ccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcact 249  Q
    ||||||||||| | ||| |||||| ||| |||  ||||||||| ||||||| |||| |||||||||||| ||||||||||||||||||| |||||| |||    
T  39058162 ccacctaaaaatactaaggtgtaagttagcaacttacacccacttgattatatacactcatttttataaattttatcaaattgtttacaaccaccttact 39058063  T
Q  250 aatttaca 257  Q
    ||||||||    
T  39058062 aatttaca 39058055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 299
Target Start/End: Original strand, 36896625 - 36896774
Alignment:
Q  151 cacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcacta 250  Q
    |||||||||||||||| |||||  ||| ||| |||||| ||  |||| ||  ||| |||||||||||| ||||||||||||||||||| || ||||||||    
T  36896625 cacctaaaaacattaaggtgtatgttagcaacctacactcatttgataatacacactcatttttataaattttatcaaattgtttacaccctcctcacta 36896724  T
Q  251 atttacactcacttttattatttcaaatatt-tttccttcaaagtttgtc 299  Q
    |||||||  |||||| || |||  ||||||| ||| ||| ||||||||||    
T  36896725 atttacatccactttcatcattctaaatattgttttcttaaaagtttgtc 36896774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 574212 - 574120
Alignment:
Q  209 atttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaatatt-tttccttcaaagtttgtcc 300  Q
    |||||||||||||||| ||||||||| ||| | ||||||||||||||||  ||||||||| |||||||||||| ||| ||||||||| |||||    
T  574212 atttttataagttttaacaaattgttcacacctacctcactaatttacatccacttttataatttcaaatattgttttcttcaaagtctgtcc 574120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 265
Target Start/End: Complemental strand, 18934661 - 18934545
Alignment:
Q  149 cccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcac 248  Q
    ||||||||||| |||||| |||||| |||||||  ||||| ||| ||||||| |||| | | ||||| ||  ||||||||||| |||| || ||||||||    
T  18934661 cccacctaaaatcattaaggtgtaagttaacaacatacactcacttgattatttacaattacttttaaaaaatttatcaaattatttatatacacctcac 18934562  T
Q  249 taatttacactcacttt 265  Q
    |||||||||| ||||||    
T  18934561 taatttacacccacttt 18934545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 170 - 281
Target Start/End: Complemental strand, 4927669 - 4927558
Alignment:
Q  170 gtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttatt 269  Q
    |||| ||||||| |||||| ||| ||||||| ||||| || |||||||||||||||||||||  |||||  || || | | ||||||||||||||| ||     
T  4927669 gtaagttaacaacctacacacacttgattatttacatacacttttataagttttatcaaattacttacactcatcttagttatttacactcactttcatc 4927570  T
Q  270 atttcaaatatt 281  Q
    ||||||||||||    
T  4927569 atttcaaatatt 4927558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 280
Target Start/End: Original strand, 6114594 - 6114664
Alignment:
Q  209 atttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaatat 280  Q
    |||||||||| ||||||||||||||||||| | | || |||||||||||  |||||||||||||||||||||    
T  6114594 atttttataa-ttttatcaaattgtttacacctatcttactaatttacatacacttttattatttcaaatat 6114664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 24073570 - 24073638
Alignment:
Q  162 attaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaat 230  Q
    ||||| |||||||||||||||||||| |||| ||||||| |||| |||||||||||  ||||| |||||    
T  24073570 attaaggtgtaaattaacaatctacatccacttgattatttacactcatttttataccttttaacaaat 24073638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 15145554 - 15145484
Alignment:
Q  150 ccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagt 220  Q
    ||||||||||| | ||| ||| |||||| ||| |||||||||| |||| || |||| ||||||||||||||    
T  15145554 ccacctaaaaataataaggtgcaaattagcaacctacacccacttgatcatttacactcatttttataagt 15145484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 150 - 299
Target Start/End: Complemental strand, 9158888 - 9158738
Alignment:
Q  150 ccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcact 249  Q
    ||||||||||||| ||| | |||| ||| ||||||||| |||| ||||||| ||||  ||||||||||| ||||||||||||| |||||  |||||||||    
T  9158888 ccacctaaaaacactaaggggtaagttagcaatctacatccacttgattatatacacccatttttataacttttatcaaattgcttacactcacctcact 9158789  T
Q  250 aatttacactcacttttattatttcaaatatt-tttccttcaaagtttgtc 299  Q
    ||||||||| |||||| || |||  ||||||| ||||||| ||||||||||    
T  9158788 aatttacacccactttcatcattctaaatattgtttccttaaaagtttgtc 9158738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 144 - 281
Target Start/End: Complemental strand, 2658655 - 2658519
Alignment:
Q  144 ttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccac 243  Q
    |||| ||||| |||| ||| ||| |||||| ||| ||| |||||||||| ||||||| |||| ||||||| |||| ||||||||||||||||||  || |    
T  2658655 ttatacccacataaatacagtaaggtgtaagttagcaacctacacccacttgattatatacactcattttaataaattttatcaaattgtttacccccgc 2658556  T
Q  244 ctcactaatttacactcacttttattatttcaaatatt 281  Q
    ||||||||||||||| |||||| || ||| ||||||||    
T  2658555 ctcactaatttacac-cactttcatcattccaaatatt 2658519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 136 - 279
Target Start/End: Original strand, 23657301 - 23657444
Alignment:
Q  136 ttagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgttt 235  Q
    |||||||||||  |||||||||||  ||||| ||| || ||| ||| ||||| |||| ||||||| |||| ||||||| |||| ||||| |||||  |||    
T  23657301 ttagcaagttacgcccacctaaaattattaaggtgcaagttagcaacctacatccacttgattatttacactcattttgataaattttaacaaatatttt 23657400  T
Q  236 acatccacctcactaatttacactcacttttattatttcaaata 279  Q
    ||| | |||||||||| |||||| |||||| || ||| ||||||    
T  23657401 acaccaacctcactaacttacacccactttcataattccaaata 23657444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 281
Target Start/End: Complemental strand, 7571131 - 7571033
Alignment:
Q  183 ctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaatatt 281  Q
    ||||| |||| | ||||| |||| |||||||||||| ||||| |||||  | ||||||||||||| |||||||||| |||||| || ||||||||||||    
T  7571131 ctacatccacttaattatttacactcatttttataaattttaacaaataatctacatccacctcaataatttacacacactttcatcatttcaaatatt 7571033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 281
Target Start/End: Complemental strand, 7577546 - 7577448
Alignment:
Q  183 ctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaatatt 281  Q
    ||||| |||| | ||||| |||| |||||||||||| ||||| |||||  | ||||||||||||| |||||||||| |||||| || ||||||||||||    
T  7577546 ctacatccacttaattatttacactcatttttataaattttaacaaataatctacatccacctcaataatttacacacactttcatcatttcaaatatt 7577448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 281
Target Start/End: Complemental strand, 7579908 - 7579810
Alignment:
Q  183 ctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaatatt 281  Q
    ||||| |||| | ||||| |||| |||||||||||| ||||| |||||  | ||||||||||||| |||||||||| |||||| || ||||||||||||    
T  7579908 ctacatccacttaattatttacactcatttttataaattttaacaaataatctacatccacctcaataatttacacacactttcatcatttcaaatatt 7579810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 299
Target Start/End: Original strand, 1398146 - 1398273
Alignment:
Q  175 ttaacaatctacacccacatgattatgtacattcatttttataagttttat-caaattgtttacatccacctcactaatttacactcactttt-attatt 272  Q
    |||||||  |||| |||| ||||||| || | |||||||||| | |||| | || |||||||||| ||||||||||||||||||||||||||| |  |||    
T  1398146 ttaacaacatacatccacttgattatttaaactcatttttatgaattttgttcagattgtttacacccacctcactaatttacactcacttttcacaatt 1398245  T
Q  273 tcaaatatt-tttccttcaaagtttgtc 299  Q
     |||||||| ||||||| ||||||||||    
T  1398246 ccaaatattgtttccttaaaagtttgtc 1398273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 26456415 - 26456523
Alignment:
Q  156 aaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaattta 255  Q
    |||| |||||| |||||| ||| ||| ||||| |||  |||||||   |||||||||| |||| |||||||||||| |||||||| |||||||||| |||    
T  26456415 aaaatcattaaggtgtaagttaccaacctacatccatttgattatt--cattcattttaataaattttatcaaattatttacatctacctcactaactta 26456512  T
Q  256 cactcactttt 266  Q
    ||| |||||||    
T  26456513 cacacactttt 26456523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 43439765 - 43439663
Alignment:
Q  152 acctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaa 251  Q
    ||||||||||| | | || ||||||| |||  ||||||||| |  | || ||||||  ||||||||||| |||||||||||||||||  |||||||||||    
T  43439765 acctaaaaacactgaggtataaattagcaagttacacccacttactcatttacatttttttttataagtcttatcaaattgtttaca--cacctcactaa 43439668  T
Q  252 tttac 256  Q
    |||||    
T  43439667 tttac 43439663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 33473429 - 33473496
Alignment:
Q  149 cccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttat 216  Q
    |||||||||||||| |||| ||||| ||||||| |||||||||| | ||||| |||| | ||||||||    
T  33473429 cccacctaaaaacactaacatgtaagttaacaacctacacccacttcattatatacactaatttttat 33473496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 30953094 - 30953156
Alignment:
Q  170 gtaaattaacaatctacacccacatgattatgtacattca-tttttataagttttatcaaatt 231  Q
    |||| |||||||| || |||||| ||||||| |||||||| ||||| ||||||||||||||||    
T  30953094 gtaagttaacaatatatacccacttgattatttacattcactttttttaagttttatcaaatt 30953156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 150 - 280
Target Start/End: Complemental strand, 9012237 - 9012107
Alignment:
Q  150 ccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcact 249  Q
    |||||||||| || ||| |||||| ||||||| |||||||||  ||||||| ||||  | ||||||||| |||| ||||||| |||||||||||||||||    
T  9012237 ccacctaaaagcactaaggtgtaagttaacaacctacacccatttgattatatacacacttttttataaattttgtcaaattatttacatccacctcact 9012138  T
Q  250 aatttacactcacttttattatttcaaatat 280  Q
    |||||||||||||||| || ||| |||||||    
T  9012137 aatttacactcactttcatcattccaaatat 9012107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 131 - 259
Target Start/End: Original strand, 93358 - 93486
Alignment:
Q  131 gtaaattagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaat 230  Q
    ||||||||||||| ||  |||||||||||| | ||| |||||| ||| ||| |||||||||| ||||||| |||| |||||||||||| |||||||||||    
T  93358 gtaaattagcaagctacacccacctaaaaatactaaggtgtaagttagcaacctacacccacttgattatctacactcatttttataaattttatcaaat 93457  T
Q  231 tgtttacatccacctcactaatttacact 259  Q
    | |||||| ||| || |||||||||||||    
T  93458 tatttacaaccatcttactaatttacact 93486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 131 - 263
Target Start/End: Original strand, 27065238 - 27065370
Alignment:
Q  131 gtaaattagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaat 230  Q
    ||||||||||||||||  |||||||||||||| ||| || ||| ||  |||  ||||||||| ||||||| |||| |||||||||||| |||||||||||    
T  27065238 gtaaattagcaagttacacccacctaaaaacactaatgtataagtttgcaacatacacccacttgattatatacactcatttttataaattttatcaaat 27065337  T
Q  231 tgtttacatccacctcactaatttacactcact 263  Q
    ||||||||  |||||||||| ||||||| ||||    
T  27065338 tgtttacactcacctcactattttacacacact 27065370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 150 - 259
Target Start/End: Original strand, 30991615 - 30991724
Alignment:
Q  150 ccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcact 249  Q
    ||||||||||| | ||| |||||| ||| |||  |||| |||| ||||||| |||| |||||||||||| ||||||||||||||||||| ||| || |||    
T  30991615 ccacctaaaaatactaaggtgtaagttagcaacatacatccacttgattatatacactcatttttataaattttatcaaattgtttacaaccatcttact 30991714  T
Q  250 aatttacact 259  Q
    ||||||||||    
T  30991715 aatttacact 30991724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 4968450 - 4968544
Alignment:
Q  183 ctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaa 277  Q
    |||||| ||| ||||||| |||| ||||||||| ||||||| |||||||||||||| ||| |||||||||||||||  ||||| || ||||||||    
T  4968450 ctacactcacttgattatttacactcatttttagaagttttttcaaattgtttacacccatctcactaatttacacctactttcatcatttcaaa 4968544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 265
Target Start/End: Original strand, 25147631 - 25147760
Alignment:
Q  136 ttagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgttt 235  Q
    |||||||| ||  |||||||||||  ||||| ||| || ||| ||| ||||| | || ||||||| |||| |||||||||||| ||||| |||||  |||    
T  25147631 ttagcaagctacacccacctaaaattattaaggtgcaagttagcaacctacatctacttgattatttacactcatttttataatttttaacaaataattt 25147730  T
Q  236 acatccacctcactaatttacactcacttt 265  Q
     || |||||||||||||||||| |||||||    
T  25147731 gcacccacctcactaatttacattcacttt 25147760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 25891332 - 25891403
Alignment:
Q  194 tgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcacttt 265  Q
    |||||||||||| |||||||||||| ||||| |||||  ||| || ||||||||||||||||||| ||||||    
T  25891332 tgattatgtacactcatttttataacttttaacaaataatttgcacccacctcactaatttacacccacttt 25891403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 27079860 - 27079941
Alignment:
Q  162 attaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccac 243  Q
    ||||| |||||| ||| |||  ||||||||| | ||||| |||| | |||||||||||||||||||||||||||||| ||||    
T  27079860 attaaggtgtaagttatcaacttacacccacttaattatttacacttatttttataagttttatcaaattgtttacaaccac 27079941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 49080889 - 49080814
Alignment:
Q  207 tcatttttataagttttatcaaattgtttacatcca--cctcactaatttacactcacttttattatttcaaatatt 281  Q
    |||||||||||| ||| |||||||||||||||||||   |||||||||||||| ||||||| || ||||||||||||    
T  49080889 tcatttttataaatttgatcaaattgtttacatccatctctcactaatttaca-tcactttcatcatttcaaatatt 49080814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 6515340 - 6515395
Alignment:
Q  245 tcactaatttacactcacttttattatttcaaatatt-tttccttcaaagtttgtc 299  Q
    ||||||||||||||||||||| || |||||||||||| ||||||| ||||||||||    
T  6515340 tcactaatttacactcactttcatcatttcaaatattatttccttaaaagtttgtc 6515395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 401
Target Start/End: Original strand, 30860493 - 30860570
Alignment:
Q  324 taattacactagcttgtatttacactaattccttaatattcttcccagttcaatccttttaaaataagccaacatctt 401  Q
    ||||||||||| |||||||||||||||||||||| |||||  | ||  || |||| |||| ||||||||||| |||||    
T  30860493 taattacactaacttgtatttacactaattccttgatattggtacccatttaatcatttttaaataagccaaaatctt 30860570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 6515245 - 6515318
Alignment:
Q  152 acctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttat 225  Q
    ||||||||  ||||| ||| || ||| ||| |||||||||| ||||||| |||| |||||||||||||| ||||    
T  6515245 acctaaaattattaaggtgcaagttagcaacctacacccacttgattatttacactcatttttataagtattat 6515318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 27065590 - 27065542
Alignment:
Q  144 ttatccccacctaaaaacattaacgtgtaaattaacaatctacacccac 192  Q
    |||| |||||||||||||| ||| |||||||||| ||| ||||||||||    
T  27065590 ttatacccacctaaaaacagtaaggtgtaaattagcaagctacacccac 27065542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 34948175 - 34948251
Alignment:
Q  149 cccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttat 225  Q
    |||||||||||  ||||  ||| || ||| ||||||||| |||| ||||||| ||||||| ||||||||||| ||||    
T  34948175 cccacctaaaattattagggtgcaagttagcaatctacatccacttgattatttacattcttttttataagtattat 34948251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0538 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: scaffold0538
Description:

Target: scaffold0538; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 184 - 280
Target Start/End: Complemental strand, 8562 - 8467
Alignment:
Q  184 tacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaatat 280  Q
    ||||||||| ||||||| |||| |||| |||||||||||||||||||||||||||  |||||||||||||||||||||| ||||| |||||||||||    
T  8562 tacacccacttgattatttacactcatgtttataagttttatcaaattgtttacactcacctcactaatttacactcac-tttatcatttcaaatat 8467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0538; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 189 - 299
Target Start/End: Complemental strand, 4092 - 3982
Alignment:
Q  189 ccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaatatt-tttcct 287  Q
    |||| ||||||| |||| |||| |||||||||||||||||||||||||||  |||||||||||||||||||||| ||||| |||||||||||| ||||||    
T  4092 ccacttgattatttacactcatgtttataagttttatcaaattgtttacactcacctcactaatttacactcac-tttatcatttcaaatattgtttcct 3994  T
Q  288 tcaaagtttgtc 299  Q
    | ||||| ||||    
T  3993 taaaagtgtgtc 3982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 33483586 - 33483497
Alignment:
Q  211 ttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaatatt-tttccttcaaagtttgtc 299  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||| |||||| || ||| |||||||| ||||||| ||||||||||    
T  33483586 ttttataaattttatcaaattgtttacacccacctcactaatttacacccactttcatcattccaaatattgtttccttgaaagtttgtc 33483497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 306
Target Start/End: Original strand, 31730441 - 31730563
Alignment:
Q  184 tacacccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaatatttt 283  Q
    |||| |||| ||||||| |||| |||||||||||| ||||| |||||  |||  | ||||||||||||||||||| |||||| || |||| | ||||| |    
T  31730441 tacatccacttgattatttacactcatttttataacttttaacaaataatttgtacccacctcactaatttacacccactttcatcatttaacatattgt 31730540  T
Q  284 tccttcaaagtttgtcccacctt 306  Q
    | ||| |||||||||| ||||||    
T  31730541 ttcttaaaagtttgtctcacctt 31730563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 24081669 - 24081750
Alignment:
Q  183 ctacacccacatgattatgtacattcatttttataagttttatcaaa-ttgtttacatccacctcactaatttacactcact 263  Q
    |||||||||| ||||||| |||| |||||||||| | |||||||||| || ||||||  |||||||||||||||||||||||    
T  24081669 ctacacccacttgattatatacactcatttttatcaattttatcaaatttttttacactcacctcactaatttacactcact 24081750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 20240178 - 20240103
Alignment:
Q  202 tacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaa 277  Q
    |||||| |||||||||| |||||||||||||||| || | | |||||| |||||||| || ||| || ||||||||    
T  20240178 tacatttatttttataaattttatcaaattgtttgcacctatctcactgatttacacccattttcatcatttcaaa 20240103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 22134162 - 22134087
Alignment:
Q  202 tacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaa 277  Q
    |||||| |||||||||| |||||||||||||||| || | | |||||| |||||||| || ||| || ||||||||    
T  22134162 tacatttatttttataaattttatcaaattgtttgcacctatctcactgatttacacccattttcatcatttcaaa 22134087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 22141515 - 22141440
Alignment:
Q  202 tacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaa 277  Q
    |||||| |||||||||| |||||||||||||||| || | | |||||| |||||||| || ||| || ||||||||    
T  22141515 tacatttatttttataaattttatcaaattgtttgcacctatctcactgatttacacccattttcatcatttcaaa 22141440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 131 - 281
Target Start/End: Original strand, 22837 - 22986
Alignment:
Q  131 gtaaattagcaagttatccccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttatcaaat 230  Q
    |||||||| |||||||   ||| ||||||| | ||| |||||| ||| |||  |||| | || ||||||| |||| |||||||||||| |||||||||||    
T  22837 gtaaattaacaagttacatccatctaaaaatactaaggtgtaagttagcaacttacatctacttgattatatacaatcatttttataaattttatcaaat 22936  T
Q  231 tgtttacatccacctcactaatttacactcacttttattatttcaaatatt 281  Q
    |||||||||||| |||| |||||||||| ||| || |||||| ||||||||    
T  22937 tgtttacatcca-ctcaataatttacacacacattcattattccaaatatt 22986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 187 - 298
Target Start/End: Original strand, 3279 - 3391
Alignment:
Q  187 acccacatgattatgtacattcatttttataagttttatcaaattgtttacatccacctcactaatttacactcacttttattatttcaaata-tttttc 285  Q
    |||||| ||||||| |||| |||||||||||| ||||| |||||  ||| || ||||||||||||||||||| |||||| ||  || |||| | ||||||    
T  3279 acccacttgattatttacactcatttttataatttttaacaaataatttgcacccacctcactaatttacacccactttcatgcttccaaagattttttc 3378  T
Q  286 cttcaaagtttgt 298  Q
    ||| |||||||||    
T  3379 cttaaaagtttgt 3391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 280676 - 280600
Alignment:
Q  149 cccacctaaaaacattaacgtgtaaattaacaatctacacccacatgattatgtacattcatttttataagttttat 225  Q
    |||||||||||  ||||| ||| |||||| |||  ||||||||| | ||||| ||||||||||||||||||| ||||    
T  280676 cccacctaaaattattaaagtgcaaattagcaacatacacccactttattatttacattcatttttataagtattat 280600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 280578 - 280526
Alignment:
Q  245 tcactaatttacactcacttttattatttcaaatatt-tttccttcaaagttt 296  Q
    |||||||||||||| |||||| || |||||||||||| ||||||| |||||||    
T  280578 tcactaatttacacccactttcatcatttcaaatattatttccttaaaagttt 280526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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