View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20508_low_5 (Length: 342)
Name: NF20508_low_5
Description: NF20508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20508_low_5 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: scaffold0072 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 41648 - 41972
Alignment:
| Q |
1 |
caaacctacccacaaaaggccacccagttaaaaacatcactagatctgagatgatgctgagaagagaaaaaggattatgttattattgtgatgaacgatt |
100 |
Q |
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| T |
41648 |
caaacctacccacaaaaggccacccagttaaaaacatcactagagctgagatgatgctcagaagagaaaaaggattatgctattattgtgatgaacgatt |
41747 |
T |
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| Q |
101 |
ctctatatctcataaatgtccaaatcgtcattatttcttatttcaaactgaagaagaagaagaacctgacccaccaccaccgcaaatcacaccatcaact |
200 |
Q |
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| T |
41748 |
ctctatatctcataaatgtccaaatcgtcattatttcttattccaaactgaagaagaagaagaacctgaaccaccaccacaacaaatcacaccatcagct |
41847 |
T |
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| Q |
201 |
gaccctgaaacaccacctattgttacggaggagcaccacttgtcactgaatgccttgaacggttctgctcgtaaaggcaccatgcggttccacggtcaaa |
300 |
Q |
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| T |
41848 |
gaccctgaaacaccacctattgttacggaggagcaccacttgtcactgaatgccttgaacggttctgctcgtaaaggcaccatgcggttccacagtcaaa |
41947 |
T |
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| Q |
301 |
ttcagggtattgctatcacgatttt |
325 |
Q |
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| T |
41948 |
ttcagggtattgctatcacgatttt |
41972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 8596019 - 8596080
Alignment:
| Q |
60 |
agaagagaaaaaggattatgttattattgtgatgaacgattctctatatctcataaatgtcc |
121 |
Q |
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| T |
8596019 |
agaagagaaaaaggtttatgttatttttgtgatgagaaattctcattttctcataaatgtcc |
8596080 |
T |
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