View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20508_low_6 (Length: 309)
Name: NF20508_low_6
Description: NF20508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20508_low_6 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 714203 - 714511
Alignment:
| Q |
1 |
tgtgagtagaataatttgatgcagtcttaaatgtcttccagtcaattttcacaaaataaacaactattgcttcagcgaaagggaagtgaggtttccagtt |
100 |
Q |
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| T |
714203 |
tgtgagtagaataatttgatgcagtcttaaatgtcttccagtcaattttcacaaaataaacaactattgcttcagcgaaagggaagtgaggtttccagtt |
714302 |
T |
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| Q |
101 |
tgtgactccacatgtctattaacttagtacaataaaacaatacttcttaattagaacaaagagagttgtattatagaattcatgctatattctttgttca |
200 |
Q |
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| T |
714303 |
tgtgactccacatgtctattaacttagtacaataaaacaatacttcttaattagaacaaagagagttgtattatagaattcatgctatattctttgttca |
714402 |
T |
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| Q |
201 |
ttatcaatgcaataaaattcaagtttcaattattaatctgtttgaatgtataattgtatatgaataataatgtattttagcacataaaccatcaagcgaa |
300 |
Q |
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| T |
714403 |
ttatcaatgcaataaaattcaagttacaattattaatctgtttgaatgtataattgtatatggataataatgtattttatcacagaaaccatcaagcgaa |
714502 |
T |
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| Q |
301 |
taaaataat |
309 |
Q |
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| T |
714503 |
taaaataat |
714511 |
T |
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Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 213 - 309
Target Start/End: Original strand, 3765086 - 3765182
Alignment:
| Q |
213 |
taaaattcaagtttcaattattaatctgtttgaatgtataattgtatatgaataataatgtattttagcacataaaccatcaagcgaataaaataat |
309 |
Q |
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| T |
3765086 |
taaagttcaagttacaattattaatctgtttgaatgaataattgtatatgaataataatgtattttatcacataaaccatcaagcgaataaaataat |
3765182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 810477 - 810566
Alignment:
| Q |
129 |
acaataaaacaatacttcttaattagaacaaagagagttgtattatagaattcatgctatattctttgttcat-tatcaatgcaataaaa |
217 |
Q |
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| T |
810477 |
acaataaaacaatacttcctaattagaacaaagagagttgtattatagaattcatgctatattctttgttcatctatcaatgcaataaaa |
810566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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