View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20508_low_8 (Length: 277)
Name: NF20508_low_8
Description: NF20508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20508_low_8 |
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| [»] scaffold0793 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 714499 - 714750
Alignment:
| Q |
8 |
cgaagaaaataataagtcgtaataaaacaattataaagggttcactgaatgactgactacccaagcaatgtctaactaataatcaaatactgacnnnnnn |
107 |
Q |
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| T |
714499 |
cgaataaaataataagtcgtaataaaacaactataaagggttcactgaatgactgactacccaaccaatgtctaactaataatcaaatactgacaaaaaa |
714598 |
T |
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| Q |
108 |
nncattccaaacataaatggtcaatgtcaaactaatgcaatcatcgctttgacaccattttgtccttagcttatgtaatttgatcaattgtcttgggtaa |
207 |
Q |
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| T |
714599 |
aacattccaaacataaatggtcaatgtcaaactaatgcaatcatcgctttgacaccattttgtccttagcttatgtaatttgatcaattgtcttgggtaa |
714698 |
T |
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| Q |
208 |
tttgaagctaatcatgtgttgatgtattgagttgtaaatcatcaacgatatc |
259 |
Q |
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| T |
714699 |
tttgaagctaatcatgtgttgatgtattgagttgtaaatcatcaacgatatc |
714750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 3765170 - 3765426
Alignment:
| Q |
8 |
cgaagaaaataataagtcgtaataaaacaattataaagggttcactgaatgactgactacccaagcaatgtctaactaataatcaaatactgacnnnnnn |
107 |
Q |
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|||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
3765170 |
cgaataaaataataagtcgtaataaaacagctataaggggttcactgaatgactgactacccaaccaatgtctaactaataattaaatactgacaaaaaa |
3765269 |
T |
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| Q |
108 |
nn-----cattccaaacataaatggtcaatgtcaaactaatgcaatcatcgctttgacaccattttgtccttagcttatgtaatttgatcaattgtcttg |
202 |
Q |
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| T |
3765270 |
aaaaaaacattccaaaaataaatgatcaatgtcaaactcatgcaatcatcgctttgacaccattttgtccttagcttatgtaatttgttctattgtcttg |
3765369 |
T |
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| Q |
203 |
ggtaatttgaagctaatcatgtgttgatgtattgagttgtaaatcatcaacgatatc |
259 |
Q |
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| T |
3765370 |
ggtagtttgaagctaatcatgtgttgatgtattgagttgtaaatcatcaacgatatc |
3765426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 801989 - 802025
Alignment:
| Q |
223 |
gtgttgatgtattgagttgtaaatcatcaacgatatc |
259 |
Q |
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| T |
801989 |
gtgttgatgtattgagttgtaaatcatcaacgatatc |
802025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0793
Description:
Target: scaffold0793; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 253
Target Start/End: Original strand, 3932 - 4020
Alignment:
| Q |
165 |
ttttgtccttagcttatgtaatttgatcaattgtcttgggtaatttgaagctaatcatgtgttgatgtattgagttgtaaatcatcaac |
253 |
Q |
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| T |
3932 |
ttttgtccttcgcttctgtcctttgctcacttgtcttgggtcatttgcagctcatcctgtgttgctgtcttgcgttgtaaatcttcaac |
4020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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