View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20509_high_3 (Length: 427)

Name: NF20509_high_3
Description: NF20509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20509_high_3
NF20509_high_3
[»] chr4 (16 HSPs)
chr4 (1-412)||(836704-837109)
chr4 (113-177)||(11383232-11383296)
chr4 (108-144)||(7700644-7700680)
chr4 (112-144)||(670487-670519)
chr4 (108-144)||(9280285-9280321)
chr4 (108-144)||(18780642-18780678)
chr4 (108-144)||(24319419-24319455)
chr4 (108-144)||(24574867-24574903)
chr4 (108-144)||(56078788-56078824)
chr4 (108-143)||(42430364-42430399)
chr4 (112-150)||(15726569-15726607)
chr4 (111-144)||(19615035-19615068)
chr4 (108-141)||(23695618-23695651)
chr4 (109-150)||(35747636-35747677)
chr4 (108-144)||(31567847-31567883)
chr4 (108-144)||(42414257-42414293)
[»] chr2 (6 HSPs)
chr2 (91-202)||(32631556-32631666)
chr2 (107-202)||(17199832-17199926)
chr2 (108-144)||(16672373-16672409)
chr2 (108-143)||(22596714-22596749)
chr2 (108-144)||(21352009-21352045)
chr2 (108-140)||(29772572-29772604)
[»] chr1 (11 HSPs)
chr1 (108-161)||(40211253-40211306)
chr1 (108-144)||(5559745-5559781)
chr1 (108-144)||(14462062-14462098)
chr1 (108-140)||(28655942-28655974)
chr1 (109-150)||(7005054-7005095)
chr1 (108-144)||(24063609-24063645)
chr1 (108-140)||(31088614-31088646)
chr1 (108-144)||(33111394-33111430)
chr1 (108-144)||(33719292-33719328)
chr1 (108-144)||(35671807-35671843)
chr1 (108-144)||(41198207-41198243)
[»] chr3 (10 HSPs)
chr3 (108-144)||(19636255-19636291)
chr3 (108-144)||(48082593-48082629)
chr3 (109-150)||(32033752-32033793)
chr3 (108-144)||(1030841-1030877)
chr3 (106-176)||(31938503-31938573)
chr3 (109-150)||(34711583-34711624)
chr3 (112-144)||(29283341-29283373)
chr3 (108-144)||(37282357-37282393)
chr3 (108-144)||(39716954-39716990)
chr3 (108-144)||(48973449-48973485)
[»] chr5 (9 HSPs)
chr5 (109-150)||(20209746-20209787)
chr5 (114-150)||(1274173-1274209)
chr5 (108-144)||(40987700-40987736)
chr5 (115-150)||(16038229-16038264)
chr5 (108-144)||(1495577-1495613)
chr5 (123-175)||(7016181-7016233)
chr5 (108-144)||(7946480-7946516)
chr5 (108-144)||(13555130-13555166)
chr5 (108-144)||(17342167-17342203)
[»] chr8 (9 HSPs)
chr8 (108-144)||(1265466-1265502)
chr8 (108-144)||(6345657-6345693)
chr8 (108-144)||(10182920-10182956)
chr8 (108-144)||(26720867-26720903)
chr8 (108-144)||(31126970-31127006)
chr8 (108-144)||(37948654-37948690)
chr8 (108-144)||(43619749-43619785)
chr8 (108-144)||(13471225-13471261)
chr8 (109-141)||(42199795-42199827)
[»] chr7 (8 HSPs)
chr7 (108-144)||(1576204-1576240)
chr7 (108-144)||(8080884-8080920)
chr7 (108-144)||(27392945-27392981)
chr7 (105-188)||(30816551-30816634)
chr7 (121-150)||(2116021-2116050)
chr7 (108-141)||(40305818-40305851)
chr7 (105-176)||(19221209-19221281)
chr7 (108-144)||(36482362-36482398)
[»] chr6 (6 HSPs)
chr6 (108-144)||(7607992-7608028)
chr6 (108-144)||(16705074-16705110)
chr6 (114-144)||(3900840-3900870)
chr6 (112-144)||(4463885-4463917)
chr6 (108-144)||(29174965-29175001)
chr6 (108-144)||(30395925-30395961)
[»] scaffold0396 (1 HSPs)
scaffold0396 (108-144)||(975-1011)


Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 836704 - 837109
Alignment:
Q  1 ttcatggtgatcagttataaggacaaaaatatcatcaaatccaaaaatttaaatactctcgcaggtaaatttggattatgattnnnnnnnttgatccagt 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    ||||||||||| |||       ||||||||||    
T  836704 ttcatggtgatcagttataaggacaaaaatatcattaaatccaaaaatttaaatactctcgcag----atttggattatcattaaaaaaattgatccagt 836799  T
Q  101 ctacttttatgcggtttaatttggatcgatttttggatatccaatttacagttttgtgaaaaaatctattaaaattactactataaagtcacgataaaat 200  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  836800 ctacttttatgcggtttaatttgaatcgatttttcgatatccaatttacaattttgtgaaaaaatctattaaaattactactataaagtcacgataaaat 836899  T
Q  201 caagttgaaatattatctctctaatgcctatacaggggatgagtagctcacttggttgagttgattaaagaaattaaggacttaaatgtctagcctagta 300  Q
    |||||||||||||||||||  |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  836900 caagttgaaatattatctc--taatgcctatacagaggatgagtagctcacttggtttagttgattaaagaaattaaggacttaaatgtctagcctagta 836997  T
Q  301 agataggaaatactaacataaaaattaacgtactaattttatgagcttcaggttatccatcgtagacttctattggttaaagagatgaatcttcaagatg 400  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  836998 agataggaaatactaacgtaaaaattaacgtactaattttacgagcttcaggttatccatcgcagacttctattggttaaagagatgaatcttcaagatg 837097  T
Q  401 ttatttgctatt 412  Q
    ||||||||||||    
T  837098 ttatttgctatt 837109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 11383296 - 11383232
Alignment:
Q  113 ggtttaatttggatcgatttttggatatccaatttacagttttgtgaaaaaatctattaaaatta 177  Q
    |||||| |||||||| ||||||||||||| || ||| | ||||||||||||||||||||||||||    
T  11383296 ggtttagtttggatcaatttttggatatcaaaattataattttgtgaaaaaatctattaaaatta 11383232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 7700680 - 7700644
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    |||||||||||||||||||||||||||||||||||||    
T  7700680 tatgcggtttaatttggatcgatttttggatatccaa 7700644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 670487 - 670519
Alignment:
Q  112 cggtttaatttggatcgatttttggatatccaa 144  Q
    |||||||||||||||||||||||||||||||||    
T  670487 cggtttaatttggatcgatttttggatatccaa 670519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 9280321 - 9280285
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||||||||||||    
T  9280321 tatgcggtttaatttggatcggtttttggatatccaa 9280285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 18780642 - 18780678
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    |||||||||||||||||||| ||||||||||||||||    
T  18780642 tatgcggtttaatttggatcaatttttggatatccaa 18780678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 24319455 - 24319419
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||||||||||||    
T  24319455 tatgcggtttaatttggatcggtttttggatatccaa 24319419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 24574867 - 24574903
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||||||||||||    
T  24574867 tatgcggtttaatttggatcggtttttggatatccaa 24574903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 56078824 - 56078788
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    |||||||||||||||||||||||||||||| ||||||    
T  56078824 tatgcggtttaatttggatcgatttttggacatccaa 56078788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 42430399 - 42430364
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatcca 143  Q
    |||||||||||||||||||||||||||||| |||||    
T  42430399 tatgcggtttaatttggatcgatttttggacatcca 42430364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 15726569 - 15726607
Alignment:
Q  112 cggtttaatttggatcgatttttggatatccaatttaca 150  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  15726569 cggtttaatttggatcggtttttggatatccaaattaca 15726607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 19615068 - 19615035
Alignment:
Q  111 gcggtttaatttggatcgatttttggatatccaa 144  Q
    |||||||||||||||||||||||||| |||||||    
T  19615068 gcggtttaatttggatcgatttttggttatccaa 19615035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 23695618 - 23695651
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatc 141  Q
    ||||||||||||||||||||| ||||||||||||    
T  23695618 tatgcggtttaatttggatcggtttttggatatc 23695651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 35747677 - 35747636
Alignment:
Q  109 atgcggtttaatttggatcgatttttggatatccaatttaca 150  Q
    |||||||||||||||||||| |||||||||||| || |||||    
T  35747677 atgcggtttaatttggatcggtttttggatatcaaaattaca 35747636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 31567847 - 31567883
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    |||||||||| |||||||||| |||||||||||||||    
T  31567847 tatgcggttttatttggatcggtttttggatatccaa 31567883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 42414257 - 42414293
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  42414257 tatgcggtttaatttggatcggtttttggatgtccaa 42414293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 32631666 - 32631556
Alignment:
Q  91 ttgatccagtctacttttatgcggtttaatttggatcgatttttggatatccaatttacagttttgtgaaaaaatctattaaaattactactataaagtc 190  Q
    ||||| || |||| ||||||||||||||||||||||   |||||||| |||||| ||||| ||||||| |||||||||||||||||| || ||| ||| |    
T  32631666 ttgatacaatctaattttatgcggtttaatttggatatgtttttggacatccaaattacaattttgtggaaaaatctattaaaattaatattat-aagac 32631568  T
Q  191 acgataaaatca 202  Q
    ||||||||||||    
T  32631567 acgataaaatca 32631556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 107 - 202
Target Start/End: Original strand, 17199832 - 17199926
Alignment:
Q  107 ttatgcggtttaatttggatcgatttttggatatccaatttacagttttgtgaaaaaatctattaaaattactactataaagtcacgataaaatca 202  Q
    ||||||| |||| ||||||| || |||||||||| ||| ||||||||||||| |||||| ||||||||||| || ||||||| ||||| |||||||    
T  17199832 ttatgcgttttagtttggattgacttttggatatacaaattacagttttgtg-aaaaatatattaaaattattattataaagacacgaaaaaatca 17199926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 16672409 - 16672373
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||||||||||||    
T  16672409 tatgcggtttaatttggatcggtttttggatatccaa 16672373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 22596749 - 22596714
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatcca 143  Q
    |||||||||||||||||||||||||||||| |||||    
T  22596749 tatgcggtttaatttggatcgatttttggacatcca 22596714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 21352009 - 21352045
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  21352009 tatgcggtttaatttggatcggtttttggatgtccaa 21352045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 29772604 - 29772572
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatat 140  Q
    ||||||||||||||||||||| |||||||||||    
T  29772604 tatgcggtttaatttggatcggtttttggatat 29772572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 40211253 - 40211306
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaatttacagttttgtgaaa 161  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| |||| |||||    
T  40211253 tatgcggtttagtttggatcgatttttggatatccaaattacaattttatgaaa 40211306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 5559781 - 5559745
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    |||| ||||||||||||||||||||||||||||||||    
T  5559781 tatgtggtttaatttggatcgatttttggatatccaa 5559745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 14462098 - 14462062
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||||||||||||    
T  14462098 tatgcggtttaatttggatcggtttttggatatccaa 14462062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 28655974 - 28655942
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatat 140  Q
    |||||||||||||||||||||||||||||||||    
T  28655974 tatgcggtttaatttggatcgatttttggatat 28655942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 7005095 - 7005054
Alignment:
Q  109 atgcggtttaatttggatcgatttttggatatccaatttaca 150  Q
    ||||||||||||||||||||| |||||||| ||||| |||||    
T  7005095 atgcggtttaatttggatcgaattttggatgtccaaattaca 7005054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 24063609 - 24063645
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||| | |||||||||||||||    
T  24063609 tatgcggtttaatttggattggtttttggatatccaa 24063645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 31088614 - 31088646
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatat 140  Q
    ||||||||||||||||| |||||||||||||||    
T  31088614 tatgcggtttaatttggttcgatttttggatat 31088646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 33111430 - 33111394
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    |||||||||||||||  ||||||||||||||||||||    
T  33111430 tatgcggtttaatttaaatcgatttttggatatccaa 33111394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 33719292 - 33719328
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  33719292 tatgcggtttaatttggatcggtttttgaatatccaa 33719328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 35671807 - 35671843
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  35671807 tatgcagtttaatttggatcggtttttggatatccaa 35671843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 41198207 - 41198243
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    |||||| |||||||||||||| |||||||||||||||    
T  41198207 tatgcgatttaatttggatcggtttttggatatccaa 41198243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 19636255 - 19636291
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    |||||||||||||||||||||||||||||||||||||    
T  19636255 tatgcggtttaatttggatcgatttttggatatccaa 19636291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 48082593 - 48082629
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    |||||||||||||||||||||||||||||||||||||    
T  48082593 tatgcggtttaatttggatcgatttttggatatccaa 48082629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 32033752 - 32033793
Alignment:
Q  109 atgcggtttaatttggatcgatttttggatatccaatttaca 150  Q
    |||||||||||||||||||| ||||||||||||||| |||||    
T  32033752 atgcggtttaatttggatcggtttttggatatccaaattaca 32033793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 1030877 - 1030841
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||||||||||||| |||||    
T  1030877 tatgcggtttaatttggatcgatttttggatgtccaa 1030841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 31938503 - 31938573
Alignment:
Q  106 tttatgcggtttaatttggatcgatttttggatatccaatttacagttttgtgaaaaaatctattaaaatt 176  Q
    ||||||| ||||| |||||||||||| || ||||||||| | ||| |||| | |||| |||||||||||||    
T  31938503 tttatgcagtttagtttggatcgattgtttgatatccaaataacaattttttcaaaagatctattaaaatt 31938573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 34711583 - 34711624
Alignment:
Q  109 atgcggtttaatttggatcgatttttggatatccaatttaca 150  Q
    |||| |||||| |||||||||||||||||||||||| |||||    
T  34711583 atgcagtttaaattggatcgatttttggatatccaaattaca 34711624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 29283373 - 29283341
Alignment:
Q  112 cggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||| |||||||||||||||    
T  29283373 cggtttaatttggatcggtttttggatatccaa 29283341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 37282357 - 37282393
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||| | |||||||||||||||    
T  37282357 tatgcggtttaatttggattggtttttggatatccaa 37282393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 39716954 - 39716990
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  39716954 tatgcggtttattttggatcgatttttggacatccaa 39716990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 48973449 - 48973485
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  48973449 tatgcggtttaatttggatcggttttttgatatccaa 48973485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 20209746 - 20209787
Alignment:
Q  109 atgcggtttaatttggatcgatttttggatatccaatttaca 150  Q
    ||||||||||||||||||| |||||||||||||||| |||||    
T  20209746 atgcggtttaatttggatcaatttttggatatccaaattaca 20209787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 1274173 - 1274209
Alignment:
Q  114 gtttaatttggatcgatttttggatatccaatttaca 150  Q
    ||||||||||||||||||||||||||||||| |||||    
T  1274173 gtttaatttggatcgatttttggatatccaaattaca 1274209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 40987736 - 40987700
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||||||||||||    
T  40987736 tatgcggtttaatttggatcggtttttggatatccaa 40987700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 150
Target Start/End: Original strand, 16038229 - 16038264
Alignment:
Q  115 tttaatttggatcgatttttggatatccaatttaca 150  Q
    |||||||||||||||||||||||||||||| |||||    
T  16038229 tttaatttggatcgatttttggatatccaaattaca 16038264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 1495577 - 1495613
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  1495577 tatgcggtttaatttggatcggtttttggacatccaa 1495613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 7016233 - 7016181
Alignment:
Q  123 ggatcgatttttggatatccaatttacagttttgtgaaaaaatctattaaaat 175  Q
    ||||| ||||||  |||||||| ||||| || |||||||||||||||||||||    
T  7016233 ggatcaattttttaatatccaaattacaattgtgtgaaaaaatctattaaaat 7016181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 7946480 - 7946516
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  7946480 tatgcggtttaatttggattgattttgggatatccaa 7946516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 13555166 - 13555130
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  13555166 tatgcggtttaatttagatcggtttttggatatccaa 13555130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 17342167 - 17342203
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    |||||||||||||||||||||  ||||||||||||||    
T  17342167 tatgcggtttaatttggatcggattttggatatccaa 17342203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 1265502 - 1265466
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||||||||||||    
T  1265502 tatgcggtttaatttggatcggtttttggatatccaa 1265466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 6345693 - 6345657
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||||||||||||    
T  6345693 tatgcggtttaatttggatcggtttttggatatccaa 6345657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 10182920 - 10182956
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||||||||||||    
T  10182920 tatgcggtttaatttggatcggtttttggatatccaa 10182956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 26720867 - 26720903
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||||||||||||    
T  26720867 tatgcggtttaatttggatcggtttttggatatccaa 26720903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 31126970 - 31127006
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||||||||||||    
T  31126970 tatgcggtttaatttggatcggtttttggatatccaa 31127006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 37948654 - 37948690
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||||||||||||    
T  37948654 tatgcggtttaatttggatcggtttttggatatccaa 37948690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 43619749 - 43619785
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||||||||||||    
T  43619749 tatgcggtttaatttggatcggtttttggatatccaa 43619785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 13471261 - 13471225
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  13471261 tatgcggtttaatttggatcggtttttgaatatccaa 13471225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 42199795 - 42199827
Alignment:
Q  109 atgcggtttaatttggatcgatttttggatatc 141  Q
    |||||||||||||||||||| ||||||||||||    
T  42199795 atgcggtttaatttggatcggtttttggatatc 42199827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 1576240 - 1576204
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||||||||||||    
T  1576240 tatgcggtttaatttggatcggtttttggatatccaa 1576204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 8080920 - 8080884
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||||||||||||    
T  8080920 tatgcggtttaatttggatcggtttttggatatccaa 8080884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 27392981 - 27392945
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||||||||||||    
T  27392981 tatgcggtttaatttggatcggtttttggatatccaa 27392945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 188
Target Start/End: Complemental strand, 30816634 - 30816551
Alignment:
Q  105 ttttatgcggtttaatttggatcgatttttggatatccaatttacagttttgtgaaaaaatctattaaaattactactataaag 188  Q
    |||||||  ||||| |||| || | ||||||||||||||| ||| ||| ||||| |||||||||| ||||||| || |||||||    
T  30816634 ttttatgtagtttagtttgaattggtttttggatatccaaattatagtattgtgtaaaaatctatgaaaattaatattataaag 30816551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 150
Target Start/End: Complemental strand, 2116050 - 2116021
Alignment:
Q  121 ttggatcgatttttggatatccaatttaca 150  Q
    ||||||||||||||||||||||||||||||    
T  2116050 ttggatcgatttttggatatccaatttaca 2116021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 40305851 - 40305818
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatc 141  Q
    |||||||||||||||||||| |||||||||||||    
T  40305851 tatgcggtttaatttggatcaatttttggatatc 40305818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 19221209 - 19221281
Alignment:
Q  105 ttttatgcggtttaatttggatcgatttttggatatccaatttacagttttgtgaaaa-aatctattaaaatt 176  Q
    ||||||| |||||| ||| ||| | |||| |||||||||| ||||| |||||| |||| ||||||||||||||    
T  19221209 ttttatgtggtttagttttgattggttttgggatatccaaattacaattttgtaaaaaaaatctattaaaatt 19221281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 36482362 - 36482398
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  36482362 tatgcggtttaatttggatcggttttttgatatccaa 36482398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 7607992 - 7608028
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||||||||||||    
T  7607992 tatgcggtttaatttggatcggtttttggatatccaa 7608028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 16705074 - 16705110
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||||||||||||    
T  16705074 tatgcggtttaatttggatcggtttttggatatccaa 16705110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 144
Target Start/End: Original strand, 3900840 - 3900870
Alignment:
Q  114 gtttaatttggatcgatttttggatatccaa 144  Q
    |||||||||||||||||||||||||||||||    
T  3900840 gtttaatttggatcgatttttggatatccaa 3900870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 4463885 - 4463917
Alignment:
Q  112 cggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||| |||||||||||||||    
T  4463885 cggtttaatttggatcggtttttggatatccaa 4463917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 29174965 - 29175001
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  29174965 tatgcggtttaatttggatcggtttttgtatatccaa 29175001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 30395961 - 30395925
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    |||||| |||||||||||||| |||||||||||||||    
T  30395961 tatgcgatttaatttggatcgctttttggatatccaa 30395925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 975 - 1011
Alignment:
Q  108 tatgcggtttaatttggatcgatttttggatatccaa 144  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  975 tatgcggtttaatttggatcggtttttggacatccaa 1011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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