View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20509_high_6 (Length: 365)
Name: NF20509_high_6
Description: NF20509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20509_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 10318150 - 10318496
Alignment:
| Q |
18 |
catgatacactttctttgaatgaatatattccattcctcttgcaatctgaagcataatatcaaccgcgacatgaagcaagaatggtaatcgcttcctcgg |
117 |
Q |
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| T |
10318150 |
catgatacactttctttgaatgaatatattccattcctcttgcaatctgaagcataatatcaaccgctacatgaagcaagaatggtaatcgcttcctcgg |
10318249 |
T |
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| Q |
118 |
accataaacctctttaatatgattgctaagtgttttgctcatcagttccatcaacagaaaacattctttcttctcctcatcagtaaaaccacaaagacag |
217 |
Q |
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| T |
10318250 |
accataaacctctttaatatgattgctaagtgttttgctcatcagttccatcaacagaaaacattctttcttctcctcatcagtaaaaccacaaagacag |
10318349 |
T |
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| Q |
218 |
tccattatatttggatgtgaaagagataaaagttctttaatctcactttccaaagcatcagtgtcaccagaacattgtcttaaaacaaaatattcaccta |
317 |
Q |
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| T |
10318350 |
tccattatatttggatgtgaaagagataaaagttctttaatctcactttccaaagcatcagtgtcaccagaacattgtcttaaaacaaaatattcaccta |
10318449 |
T |
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| Q |
318 |
accattgaatctctttgtactgacttccattccctatgcttctcctc |
364 |
Q |
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| T |
10318450 |
accattgaatctctttgtactgacttccattccctattcttctcctc |
10318496 |
T |
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