View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20509_high_8 (Length: 357)
Name: NF20509_high_8
Description: NF20509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20509_high_8 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 357
Target Start/End: Original strand, 10910345 - 10910689
Alignment:
| Q |
16 |
tatccatctaccaggtgaattatttgagtgtaatgaatgcttaatgttaacttgtcgttgtacaattactattactatcccaattggattcgtaaagtta |
115 |
Q |
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| T |
10910345 |
tatccatctaccaggtgaattatttgagtgtaatgaatgcttaatgttaacttgtcgttgtacaattactattactatcccaattggattcgtaaagtta |
10910444 |
T |
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| Q |
116 |
attttgtattgctcttaaaggaaattgagttgaggctatttgtatgcttataattttttagactatgcacagctaataatttgtatttccatggcaattg |
215 |
Q |
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| T |
10910445 |
attttgtattgctcttaaaggaaattgagttgaggctatttgtatgcttataattttttagactatgcacagctaataatttgtatttccatggcaattg |
10910544 |
T |
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| Q |
216 |
caaatttgcaagtggccctgcatatctattattgcaagtatttccatgcccttaatttgattgctaatgtatgtttggcctttattaattttgttccact |
315 |
Q |
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| T |
10910545 |
caaatttgcaagtggccctgcatatctattattgcaagtatttccatgcctttaatttgattgctaatgtatgtttggcctttattaattttgttccact |
10910644 |
T |
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| Q |
316 |
cttccttctctataaagcaacttctc---aaccactttcatttcc |
357 |
Q |
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| T |
10910645 |
cttccttctctataaattaacttctcaataaccactttcatttcc |
10910689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 10912968 - 10913020
Alignment:
| Q |
305 |
tttgttccactcttccttctctataaagcaacttctcaaccactttcatttcc |
357 |
Q |
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| T |
10912968 |
tttgtttcactctcctttctctataaattaacttctcaaccactttcatttcc |
10913020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 19465310 - 19465390
Alignment:
| Q |
20 |
catctaccaggtgaattatttgagtgtaatgaatgcttaatgttaacttgtcgttgtacaattactattactatcccaatt |
100 |
Q |
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| T |
19465310 |
catctactaggtgaattatttgagtgtattgaatacttaatgttgacttgtcattgtacaattactattactgtcccaatt |
19465390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 19562990 - 19563070
Alignment:
| Q |
20 |
catctaccaggtgaattatttgagtgtaatgaatgcttaatgttaacttgtcgttgtacaattactattactatcccaatt |
100 |
Q |
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| T |
19562990 |
catctactaggtgaattatttgagtgtattgaatacttaatgttgacttgtcattgtacaattactattactgtcccaatt |
19563070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 22004029 - 22004109
Alignment:
| Q |
20 |
catctaccaggtgaattatttgagtgtaatgaatgcttaatgttaacttgtcgttgtacaattactattactatcccaatt |
100 |
Q |
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| T |
22004029 |
catctactaggtgaattatttgagtgtattgaatacttaatgttgacttgtcattgtacaattactattactgtcccaatt |
22004109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 22010300 - 22010380
Alignment:
| Q |
20 |
catctaccaggtgaattatttgagtgtaatgaatgcttaatgttaacttgtcgttgtacaattactattactatcccaatt |
100 |
Q |
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| T |
22010300 |
catctactaggtgaattatttgagtgtattgaatacttaatgttgacttgtcattgtacaattactattactgtcccaatt |
22010380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 19706603 - 19706752
Alignment:
| Q |
20 |
catctaccaggtgaattatttgag-tgtaatgaatgcttaatgttaacttgtcgttgtacaattactattactatcccaattggattcgtaaagttaatt |
118 |
Q |
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||||||| |||||||||||||||| |||| ||||| ||||||||| | || || || |||||||||||||| | |||||||| ||||||||||| |
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| T |
19706603 |
catctactaggtgaattatttgagttgtattgaatacttaatgttgatttttcattttacaattactattagtgtcccaatt-------taaagttaatt |
19706695 |
T |
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| Q |
119 |
t-tgtattgctcttaaaggaaattgagttgaggctatttgtatgcttataatttttt |
174 |
Q |
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| T |
19706696 |
tacgtaatgctcttaatggacagtgagttaagactttttgtatgcttatcatttttt |
19706752 |
T |
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