View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20509_low_17 (Length: 240)
Name: NF20509_low_17
Description: NF20509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20509_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 50 - 219
Target Start/End: Original strand, 10910704 - 10910873
Alignment:
| Q |
50 |
cttcctcctacactacacaagcttcataagttcataaccctcnnnnnnnggtgatttttatgtcctcgaccatggcagaaaggagttattacgcctgtga |
149 |
Q |
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| T |
10910704 |
cttcctcctacactacacaagcttcataagttcataaccctctttttttggtgatttttatgtcctagaccatggcagaaaggagttattatgcctgtga |
10910803 |
T |
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| Q |
150 |
tgagaccaaaccaaagcttaacatcttcattgcagtggctgctatgctgtggtctttgatgtgagttttg |
219 |
Q |
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| T |
10910804 |
tgagaccaaaccaaagcttgacatcttcattgtagtggctgctatgttgtggtctttgatgtgagttttg |
10910873 |
T |
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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10912985 - 10913021
Alignment:
| Q |
1 |
tctctataaagtaacttctcaaccactttcatttcca |
37 |
Q |
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| T |
10912985 |
tctctataaattaacttctcaaccactttcatttcca |
10913021 |
T |
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