View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20509_low_2 (Length: 676)
Name: NF20509_low_2
Description: NF20509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20509_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 11 - 600
Target Start/End: Original strand, 34021979 - 34022551
Alignment:
| Q |
11 |
cagagaatcacgtggtgtagccgtcctacaaatttggtacatttgcaaattcaaggttagcttttagacatggaccgtaatgtatcaccgaaagcataca |
110 |
Q |
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| T |
34021979 |
cagagaatcacgtggtgtcgccgtcctacaaatttggtacatttgcaaattcaaggttagcttttagacatggaccgtaatgtatcaccgaaagcataca |
34022078 |
T |
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| Q |
111 |
catttttagtgccaagtttaaaataaaaaatgtgacaagtttttgatccaaaaacaactttgtaattgtgccgttttcacatttagatgatcaaatttgc |
210 |
Q |
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| T |
34022079 |
catttttagtgccaagtttaaaataaaaaatgtgacaagttttagatccaaaaacaactttgtaattgtgccgttttcacatttagatgatcaaatttgc |
34022178 |
T |
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| Q |
211 |
tactgctattttcacgaattgattccattaaatgcatcaagtccaacatatggaccctgttaaagacaagagttggctattagtcttggccataaccaag |
310 |
Q |
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| T |
34022179 |
tactgctattttcacgaatagattccattaaatgcatcaagtccaacatatggaccctgttaaagacaagagttggctattagtcttggccataaccaag |
34022278 |
T |
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| Q |
311 |
aatgtctcttttctttgtcttttctgtataccaaaatgtatcataattagtccacagctcacatttcagaatccaatgatgatgaatatagaagcaacat |
410 |
Q |
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| T |
34022279 |
aatgtctcttttctttgtcttttctgtataccaaaatgtatcataattagtccacagctcacatttcagaatccaatgatgatgaatatagaagcaaca- |
34022377 |
T |
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| Q |
411 |
ttaatagactttcattttaatagaagcattgaatcgaaataacacaacaaactgcctcnnnnnnnccttagttctggtcaaggacagatccaatgctagt |
510 |
Q |
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| T |
34022378 |
---------------tttaatagaagcattgaatcgaaataactcaacaaactgcgtcaaaaaaaccttagttctggtcaaggacagatccaatgctagt |
34022462 |
T |
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| Q |
511 |
atatttcaaggaccacctgaataactccnnnnnnnncaatatcacaactcagcctcttcatctgcctcctttataacactacttatttca |
600 |
Q |
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| T |
34022463 |
atatttcaaggaccacctgaataactcc-aaaaaaacaatatcacaactcagcctcttcatctgcctcctttataacactacttatttca |
34022551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 659
Target Start/End: Original strand, 34022550 - 34022585
Alignment:
| Q |
624 |
cacggtgaatttgtcaaatttacatcgggtcactat |
659 |
Q |
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| T |
34022550 |
cacggtgaatttgtcaaatttacaccgggtcactat |
34022585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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