View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20509_low_4 (Length: 384)
Name: NF20509_low_4
Description: NF20509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20509_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 42218851 - 42219227
Alignment:
| Q |
1 |
cattatcggtttgctttagatattgccgtgtgtcaattcttgcgattctttcgcagtatccttcgtaataaatagcgaagtttttaggaaacatgcatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42218851 |
cattatcggtttgctttagatattgccgtgtgtcaattcttgcgattctttcgcagtatccttcgtaataaatagcgaagtttttaggaaacatacatac |
42218950 |
T |
|
| Q |
101 |
aatgttgaatacatgatcatgatttcatgaagacaatatcacacgagtcaatggttggattggtcaatgatacattccattgaaagtaattacgtggcgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42218951 |
aatgttgaatacatgatcatgatttcatgaagacaacatcacacgagttaatggttggattggtcaatgatacattccattgaaagtaattacgtggcgt |
42219050 |
T |
|
| Q |
201 |
aagtgtaaagtttgatagctggtgttaatgtatcttatcagttagacaggcgattgcttcttagtatcaactgcaatgcgtgcaccggcaatactttcac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42219051 |
aagtgtaaagtttgatagctggtgttaatgtatcttatcagttcgacaggcgattgcttcttagtaccaactgcaatgcgtgcaccggcaatactttcac |
42219150 |
T |
|
| Q |
301 |
aatgcttgcctggcctagtgcctcgcgatcatggaagtctcagtatatcgtccgttcccgagaaagctattcatctc |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42219151 |
aatgcttgcctggcctagtgcctcgcgatcatggaagtctcagtatatcgtccgttcccgagaaagctattcatctc |
42219227 |
T |
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