View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2050_high_3 (Length: 432)
Name: NF2050_high_3
Description: NF2050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2050_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Complemental strand, 23588072 - 23587662
Alignment:
| Q |
16 |
cacttctcaacaggctccatacacttcctaaacagatccatgttgagctcttcaaaacgagcacgagtgatggtagtgtaaaagtcaataccctcaaaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23588072 |
cacttctcaacaggctccatacacttcctaaacagatccatgttgagctcttcaaaacgagcccgagtgatggtagtgtaaaagtcaataccctcaaaca |
23587973 |
T |
|
| Q |
116 |
atgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccact |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23587972 |
atgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccact |
23587873 |
T |
|
| Q |
216 |
aatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23587872 |
aatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagct |
23587773 |
T |
|
| Q |
316 |
ttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcaccagtacttgtag |
415 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
23587772 |
ttgacctcaaagataccttcctcaatagtaagtagggaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcacccgtgcttgtag |
23587673 |
T |
|
| Q |
416 |
ctttcttatca |
426 |
Q |
| |
|
||||||||||| |
|
|
| T |
23587672 |
ctttcttatca |
23587662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Complemental strand, 23596924 - 23596514
Alignment:
| Q |
16 |
cacttctcaacaggctccatacacttcctaaacagatccatgttgagctcttcaaaacgagcacgagtgatggtagtgtaaaagtcaataccctcaaaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23596924 |
cacttctcaacaggctccatacacttcctaaatagatccatgttgagctcttcaaaacgagcgcgagtaatggtagtgtaaaagtcaataccctcaaaca |
23596825 |
T |
|
| Q |
116 |
atgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccact |
215 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23596824 |
aagaatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaagcagttctcaaccttctaagagcccttggatttccact |
23596725 |
T |
|
| Q |
216 |
aatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagct |
315 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23596724 |
aatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagct |
23596625 |
T |
|
| Q |
316 |
ttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcaccagtacttgtag |
415 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23596624 |
ttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcaccagtacttgtag |
23596525 |
T |
|
| Q |
416 |
ctttcttatca |
426 |
Q |
| |
|
||||||||||| |
|
|
| T |
23596524 |
ctttcttatca |
23596514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 16 - 397
Target Start/End: Original strand, 54396252 - 54396633
Alignment:
| Q |
16 |
cacttctcaacaggctccatacacttcctaaacagatccatgttgagctcttcaaaacgagcacgagtgatggtagtgtaaaagtcaataccctcaaaca |
115 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| |||||| || | |||||||| | || | || || || | || || ||||| || ||||||| |
|
|
| T |
54396252 |
cacttctcaacaggttccatacatttcctaaacaaatccatattcaattcttcaaatctcgcccttgtaatagttgcatagaaatcaattccttcaaaca |
54396351 |
T |
|
| Q |
116 |
atgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccact |
215 |
Q |
| |
|
| ||||||||||| || || || |||||||| || ||||| || |||||||||||||| ||||| ||||| ||||| || | ||| |||| ||| ||||| |
|
|
| T |
54396352 |
aagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaatctcctcaaagctcttgcattaccact |
54396451 |
T |
|
| Q |
216 |
aatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagct |
315 |
Q |
| |
|
||||||||||||||| |||||| | || || ||||||||| |||||||| |||||||||||||||||||| || | ||| ||||||||||| |||||| |
|
|
| T |
54396452 |
aatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagct |
54396551 |
T |
|
| Q |
316 |
ttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttct |
397 |
Q |
| |
|
||||| || ||||| ||||||||||||||||| || |||||||| ||||||||||| || | || |||||||| ||||||| |
|
|
| T |
54396552 |
ttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttct |
54396633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 383
Target Start/End: Original strand, 35132600 - 35132644
Alignment:
| Q |
339 |
aatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaa |
383 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
35132600 |
aatagtaagtattgaaacatcaaaagtgccaccaccaagatcgaa |
35132644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 6e-84; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 16 - 405
Target Start/End: Original strand, 8102496 - 8102885
Alignment:
| Q |
16 |
cacttctcaacaggctccatacacttcctaaacagatccatgttgagctcttcaaaacgagcacgagtgatggtagtgtaaaagtcaataccctcaaaca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| || || ||||| | ||||| ||||| || |||||||| |||| ||||||||||| |
|
|
| T |
8102496 |
cacttctcaacaggctccatacacttcctgaacagatccatgttaagttcctcaaatctggcacgggtgattgtggtgtaaaaatcaacaccctcaaaca |
8102595 |
T |
|
| Q |
116 |
atgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccact |
215 |
Q |
| |
|
| |||||||| |||||||| ||||| || || || || || || ||||| |||||||| || || ||||||||||| ||||| ||||| || ||||| || |
|
|
| T |
8102596 |
aagaatcaatctcaatggtagtttgtgcggttgatgagagagttctcttcgctctctcacatgcggttctcaatctcctaagtgccctagggtttccgct |
8102695 |
T |
|
| Q |
216 |
aatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagct |
315 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||||||||||||| | ||||| |||||||||||||||||||| || | ||| |||||||| || ||||| |
|
|
| T |
8102696 |
aatatccttcttgttcttcctcttaaactcttgaacaaaatgggtaaccattctgttatcaaaatcttcaccaccaagatgggtatcacctgcagtagcc |
8102795 |
T |
|
| Q |
316 |
ttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcacca |
405 |
Q |
| |
|
|| || ||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||| | ||| || || | ||||||||||||||| |
|
|
| T |
8102796 |
ttaacttcaaatataccctcttcaatagtaagaagtgacacatcaaaagtaccaccacccaaatcaaagatcaacacgttcttctcacca |
8102885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 16 - 371
Target Start/End: Complemental strand, 8017752 - 8017397
Alignment:
| Q |
16 |
cacttctcaacaggctccatacacttcctaaacagatccatgttgagctcttcaaaacgagcacgagtgatggtagtgtaaaagtcaataccctcaaaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||| || || ||||| | ||||| ||||| || |||||||| |||| ||||||||||| |
|
|
| T |
8017752 |
cacttctcaacaggctccatacactttctgaacagatccatgttaagttcctcaaatcttgcacgggtgattgtggtgtaaaaatcaacaccctcaaaca |
8017653 |
T |
|
| Q |
116 |
atgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccact |
215 |
Q |
| |
|
| |||||||| |||||||| ||||| |||||||| || || || ||||| |||||||| ||||| || ||||| || ||||| || || || |||||||| |
|
|
| T |
8017652 |
aagaatcaatctcaatggtagtttgtgcagtagaagagagagttctcttcgctctctcacaagctgtcctcaacctcctaagtgctctagggtttccact |
8017553 |
T |
|
| Q |
216 |
aatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagct |
315 |
Q |
| |
|
|||||||||||| ||||||||||| || || ||||||||||| || ||||| ||||| |||||||||||||| || | ||| ||||||||||| ||||| |
|
|
| T |
8017552 |
aatatccttcttgttcttcctcttaaactcctgaacaaaatgattaaccattctgttgtcaaaatcttcaccaccaagatgggtatcaccagcagtagcc |
8017453 |
T |
|
| Q |
316 |
ttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccacc |
371 |
Q |
| |
|
|| || ||||| ||||| |||||||||||||| || || ||||||||||| ||||| |
|
|
| T |
8017452 |
ttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtaccacc |
8017397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 377
Target Start/End: Original strand, 39985478 - 39985836
Alignment:
| Q |
19 |
ttctcaacaggctccatacacttcctaaacagatccatgttgagctcttcaaaacgagcacgagtgatggtagtgtaaaagtcaataccctcaaacaatg |
118 |
Q |
| |
|
|||||||| ||||||||||| || ||||| ||||||||||||||||| ||||| | |||||||| |||| | ||| || ||||| || ||||| | | |
|
|
| T |
39985478 |
ttctcaactggctccatacattttctaaagagatccatgttgagctcctcaaatcttgcacgagtaatgggggagtagaaatcaattccttcaaaaagag |
39985577 |
T |
|
| Q |
119 |
aatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaat |
218 |
Q |
| |
|
||||||||||||||||||| || |||||||| || || || ||||| ||||| || |||||||| ||||| || |||||||| || || || ||||| || |
|
|
| T |
39985578 |
aatcaatttcaatggtggtctgggcagtagaagagagagttctcttcgctctttcacaagcagtcctcaacctcctaagagctctggggttgccactgat |
39985677 |
T |
|
| Q |
219 |
atccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttc |
318 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||| |||||||| |||||||| | ||| || || || ||||| |||||| |
|
|
| T |
39985678 |
gtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttgtcaaaatcctcacctccaagatgggtgtctccggctgtggctttc |
39985777 |
T |
|
| Q |
319 |
acctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaag |
377 |
Q |
| |
|
|||||||||||||| ||||||||||| || | || ||||||||||| ||||||||||| |
|
|
| T |
39985778 |
acctcaaagataccctcttcaatagttagcaaagagacatcaaaagtaccaccaccaag |
39985836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 290
Target Start/End: Complemental strand, 8383080 - 8382941
Alignment:
| Q |
151 |
gaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaa |
250 |
Q |
| |
|
||||| ||||| || || ||||||||||| ||||| || |||||||||||| |||| || |||||||| ||||| |||| |||||||||||| || | || |
|
|
| T |
8383080 |
gaaagtgtcctttttgccctctcgcaagccgttcttaaccttctaagagcctttgggttcccactaatgtccttattatgcttcctcttgaactcgtcaa |
8382981 |
T |
|
| Q |
251 |
caaaatggttcaccatcctgttatcaaaatcttcacctcc |
290 |
Q |
| |
|
|||| | ||||| || |||||||| || ||||||||||| |
|
|
| T |
8382980 |
caaagtacttcacgattctgttatctaagtcttcacctcc |
8382941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 292
Target Start/End: Original strand, 8581664 - 8581805
Alignment:
| Q |
151 |
gaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaa |
250 |
Q |
| |
|
||||| ||||| || |||||||| |||||||| ||||| ||||||| || ||||||||||| |||| |||| |||| || |||||||| || | |
|
|
| T |
8581664 |
gaaagtgtccttttcgctctctcacaagcagtcctcaaccttctaatggcttttggatttccaataatctcctctttatgttttctcttgaactccgaca |
8581763 |
T |
|
| Q |
251 |
caaaatggttcaccatcctgttatcaaaatcttcacctccca |
292 |
Q |
| |
|
|||| || |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
8581764 |
caaagtgattcaccattctgttatcaaaatcttcccctccca |
8581805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 278
Target Start/End: Complemental strand, 7877931 - 7877810
Alignment:
| Q |
157 |
gtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaat |
256 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||| || ||||| ||||| || ||||||| ||| ||| |||||||||||||| || || || |||| |
|
|
| T |
7877931 |
gtccttttagccctctcacatgcagttctcaacctcctaagggccctcgggtttccaccaatgtccactttattcttcctcttaaactccatcactaaat |
7877832 |
T |
|
| Q |
257 |
ggttcaccatcctgttatcaaa |
278 |
Q |
| |
|
|||||| ||| ||||||||||| |
|
|
| T |
7877831 |
ggttcaacattctgttatcaaa |
7877810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 380
Target Start/End: Original strand, 8602139 - 8602167
Alignment:
| Q |
352 |
gaaacatcaaaagttccaccaccaagatc |
380 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8602139 |
gaaacatcaaaagttccaccaccaagatc |
8602167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 17717023 - 17716665
Alignment:
| Q |
19 |
ttctcaacaggctccatacacttcctaaacagatccatgttgagctcttcaaaacgagcacgagtgatggtagtgtaaaagtcaataccctcaaacaatg |
118 |
Q |
| |
|
|||||||| |||||||||| | ||| || ||||||| ||||||||||||||| | |||||||| |||| || || || ||||| |||||||| | |
|
|
| T |
17717023 |
ttctcaacttgctccatacattccctgaagagatccaagttgagctcttcaaatctggcacgagtaatgggggtatagaaatcaattccctcaaatagac |
17716924 |
T |
|
| Q |
119 |
aatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaat |
218 |
Q |
| |
|
||||||||||||||||||| || |||||||| || || | ||||| || ||||| |||||||| ||||| || ||||||| ||||| || |||||||| |
|
|
| T |
17716923 |
aatcaatttcaatggtggtctgggcagtagatgatagagctctcttcgccctctcacaagcagtcctcaacctcataagagctcttgggttgccactaat |
17716824 |
T |
|
| Q |
219 |
atccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttc |
318 |
Q |
| |
|
|||||||| ||||| |||||||| ||| ||||||| ||||||||||| ||||||| |||||| |||||||| | ||| | || || ||||||||||| |
|
|
| T |
17716823 |
gtccttcttgttctttctcttgaactctcgaacaaagtggttcaccattctgttattaaaatcctcacctccaagatgggcgtctccggctgtagcttta |
17716724 |
T |
|
| Q |
319 |
acctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaag |
377 |
Q |
| |
|
|||| |||| ||| ||||||||||| || | || ||||||||||| ||||||||||| |
|
|
| T |
17716723 |
acctgaaagttacactcttcaatagttagcaaagagacatcaaaagtaccaccaccaag |
17716665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 17718287 - 17717926
Alignment:
| Q |
19 |
ttctcaacaggctccatacacttcctaaacagatccatgttgagctcttcaaaacgagcacgagtgatggtagtgtaaaagtcaataccctcaaacaatg |
118 |
Q |
| |
|
|||||||| |||||||||| | ||| || ||||||| ||||||||||||||| | |||||||| |||| || || || ||||| |||||||| | |
|
|
| T |
17718287 |
ttctcaacttgctccatacattccctgaagagatccaagttgagctcttcaaatctggcacgagtaatgggggtatagaaatcaattccctcaaatagac |
17718188 |
T |
|
| Q |
119 |
aatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttc-taagagcccttggatttccactaa |
217 |
Q |
| |
|
||||||||||||||||||| || | |||||| || || | ||||| || ||||| |||||||| ||||| |||| ||||||| ||||| || ||||||| |
|
|
| T |
17718187 |
aatcaatttcaatggtggtctgggaagtagatgatagagctctcttcgccctctcacaagcagtcctcaa-cttcataagagctcttgggttgccactaa |
17718089 |
T |
|
| Q |
218 |
tatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagcttt |
317 |
Q |
| |
|
| |||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||| |||||| |||||||| | ||| | || || ||||||||||| |
|
|
| T |
17718088 |
tgtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttattaaaatcctcacctccaagatgggcgtctccggctgtagcttt |
17717989 |
T |
|
| Q |
318 |
cacctcaaagataccttcttcaatagta---agtagtgaaacatcaaaagttccaccaccaag |
377 |
Q |
| |
|
|||| |||| ||| |||||||||||| || | || ||||||||||| ||||||||||| |
|
|
| T |
17717988 |
aacctgaaagttacactcttcaatagtagttagcaaagagacatcaaaagtaccaccaccaag |
17717926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 17622281 - 17622010
Alignment:
| Q |
19 |
ttctcaacaggctccatacacttcctaaacagatccatgttgagctcttcaaaacgagcacgagtgatggtagtgtaaaagtcaataccctcaaacaatg |
118 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||||||||||||||| |||||| |||||||| |||| | | | || ||||| ||||| || | |
|
|
| T |
17622281 |
ttctcaacttgctccatacatttcctaaagagatccatgttgagcttttcaaatgtggcacgagtaatgggggagcagaaatcaattccctcgaatagac |
17622182 |
T |
|
| Q |
119 |
aatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaat |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||| | || || || ||||| || |||| |||||||| ||||| || ||||||| ||||| || ||||| || |
|
|
| T |
17622181 |
aatcaatttcaatggtggtttggacagtaaatgatagagttctcttggccttctcacaagcagtcctcaacctcataagagctcttgggttgccactgat |
17622082 |
T |
|
| Q |
219 |
atccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcc |
290 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
17622081 |
gtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttattaaaatcctcacctcc |
17622010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 17648376 - 17648106
Alignment:
| Q |
20 |
tctcaacaggctccatacacttcctaaacagatccatgttgagctcttcaaaacgagcacgagtgatggtagtgtaaaagtcaataccctcaaacaatga |
119 |
Q |
| |
|
||||||| |||||||||| |||||||| ||||||||||||||||| ||||| | |||||||| |||| | | | || ||||| ||||| || | | |
|
|
| T |
17648376 |
tctcaacttgctccatacatttcctaaagagatccatgttgagctcctcaaatcttgcacgagtaatggaggagcagaaatcaattccctcgaatagaca |
17648277 |
T |
|
| Q |
120 |
atcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaata |
219 |
Q |
| |
|
||||||||||||||||||||| |||| | || || || ||||| || |||| |||||||| ||||| || ||||||| ||||| || |||||||| |
|
|
| T |
17648276 |
atcaatttcaatggtggtttggagagtaaatgatagagttctcttggccttctcacaagcagtcctcaacctcataagagctcttgggttgccactaatg |
17648177 |
T |
|
| Q |
220 |
tccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcc |
290 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||| || |||||||| ||||||| |||||| |||||||| |
|
|
| T |
17648176 |
tccttcttgttctttctcttgaacacttgaacaaagtgattcaccattctgttattaaaatcctcacctcc |
17648106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 17667019 - 17666694
Alignment:
| Q |
19 |
ttctcaacaggctccatacacttcctaaacagatccatgttgagctcttcaaaacgagcacgagtgatggtagtgtaaaagtcaataccctcaaacaatg |
118 |
Q |
| |
|
|||||||| |||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||| | | | || ||||| ||||| || | |
|
|
| T |
17667019 |
ttctcaacttgctccatacatttcctaaagagatccatgttgagctcttcaaatgtggcacgagtaatgaaggagcagaaatcaattccctcgaatagac |
17666920 |
T |
|
| Q |
119 |
aatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaat |
218 |
Q |
| |
|
| ||||||||||||||||| ||||||||||| || || | ||||| || ||||| |||||||| | ||| || ||||||| ||||| || ||||| || |
|
|
| T |
17666919 |
attcaatttcaatggtggtctgagcagtagatgatagagctctcttcgccctctcacaagcagtccccaacctcataagagctcttgggttgccactgat |
17666820 |
T |
|
| Q |
219 |
atccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttc |
318 |
Q |
| |
|
||||| || ||||| || ||||| ||||||||||| || |||||||| ||||||| |||||| |||||||| | ||| | || || | ||||||||| |
|
|
| T |
17666819 |
gtccttgttgttctttcttttgaactcttgaacaaagtgattcaccattctgttattaaaatcctcacctccaagatgggggtctccggttgtagcttta |
17666720 |
T |
|
| Q |
319 |
acctcaaagataccttcttcaatagt |
344 |
Q |
| |
|
||| ||| |||||| ||||||||||| |
|
|
| T |
17666719 |
accccaatgataccctcttcaatagt |
17666694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 17704391 - 17704120
Alignment:
| Q |
19 |
ttctcaacaggctccatacacttcctaaacagatccatgttgagctcttcaaaacgagcacgagtgatggtagtgtaaaagtcaataccctcaaacaatg |
118 |
Q |
| |
|
||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||| | |||||||| ||| | ||| | || || || |||| || || |
|
|
| T |
17704391 |
ttctcgacagtctccatacatttcataaagagatccatgttgagctcttcaaatctggcacgagtaatgatggtgaagaaatccattcccttgaataaac |
17704292 |
T |
|
| Q |
119 |
aatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaat |
218 |
Q |
| |
|
|| ||||||||||||||||||| |||| | || || || ||||| || |||| |||||||| ||||| || ||||||| ||| | | ||||| || |
|
|
| T |
17704291 |
aaacaatttcaatggtggtttggagagtaaatgatagagttctcttggccttctcacaagcagtcctcaacctcataagagctctttggtcgccactgat |
17704192 |
T |
|
| Q |
219 |
atccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcc |
290 |
Q |
| |
|
|||||| | ||||| |||||||| ||||||||||| | ||||||||| ||||||| |||||| |||||||| |
|
|
| T |
17704191 |
gtccttcctgttctttctcttgaactcttgaacaaagtagttcaccattctgttattaaaatcctcacctcc |
17704120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 194 - 377
Target Start/End: Complemental strand, 17705899 - 17705716
Alignment:
| Q |
194 |
taagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaa |
293 |
Q |
| |
|
||||||| | ||| || |||||||| |||||||| ||||| |||||||| |||| |||||| ||||||||||| ||||||| |||||| |||||||| | |
|
|
| T |
17705899 |
taagagctcatgggttgccactaatgtccttcttcttctttctcttgaactcttaaacaaagtggttcaccattctgttattaaaatcctcacctccaag |
17705800 |
T |
|
| Q |
294 |
atgtgtatcaccagctgtagctttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaag |
377 |
Q |
| |
|
||| || || || | | ||||||| ||||||| || || ||||||| ||| || | || |||||||||| ||||||||||| |
|
|
| T |
17705799 |
atgggtgtctccggatatagctttaacctcaacgacactctcttcaaaagttagcaaagaggcatcaaaagtcccaccaccaag |
17705716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 17706049 - 17705997
Alignment:
| Q |
19 |
ttctcaacaggctccatacacttcctaaacagatccatgttgagctcttcaaa |
71 |
Q |
| |
|
|||||||| |||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
17706049 |
ttctcaacttgctccatacatttcctaaagagatccatgttgagctcttcaaa |
17705997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 34466991 - 34466906
Alignment:
| Q |
157 |
gtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaa |
242 |
Q |
| |
|
|||||||| || ||||||| ||||||||||| || || | ||| || || ||||||||||||||||| |||| |||||||||||| |
|
|
| T |
34466991 |
gtcctctttgcattctcgcacgcagttctcaacctcctcaaagctctagggtttccactaatatccttattatgcttcctcttgaa |
34466906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 266
Target Start/End: Original strand, 11209371 - 11209471
Alignment:
| Q |
166 |
gctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcacca |
265 |
Q |
| |
|
||||||||||||||||| ||| || ||||| || ||||||||||||||||| ||| | || | ||||||| ||| |||| |||||||||||||||| |
|
|
| T |
11209371 |
gctctctcgcaagcagtcttcagcctcctaagggctcttggatttccactaatgtccattttttccttcctcaagaactctttcacaaaatggttcacca |
11209470 |
T |
|
| Q |
266 |
t |
266 |
Q |
| |
|
| |
|
|
| T |
11209471 |
t |
11209471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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