View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2050_high_9 (Length: 252)
Name: NF2050_high_9
Description: NF2050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2050_high_9 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 18107716 - 18107956
Alignment:
| Q |
9 |
gataatactgcctaatatgaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttgcaacagtgcaagtttggtaactct |
108 |
Q |
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| T |
18107716 |
gataatactgcctaatatgaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttggaacagtgcaagtttggtaactct |
18107815 |
T |
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| Q |
109 |
ttaggtatgctgctgattttgtattctagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatgtttctttggctttgttctttta |
208 |
Q |
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| T |
18107816 |
ttaggtatgct---gattttgtatactagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatttttctttggctttgttctttta |
18107912 |
T |
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| Q |
209 |
tcatgttttgaggtttggtctttgtgagcaaacctattccaaat |
252 |
Q |
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| T |
18107913 |
tcatgttttgaggtttggtctttgtgagcagacctattccaaat |
18107956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 18138265 - 18138026
Alignment:
| Q |
10 |
ataatactgcctaatatgaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttgcaacagtgcaagtttggtaactctt |
109 |
Q |
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| T |
18138265 |
ataatactgcctaataataaatataaatgcagaaattgaaatttcagaaggtaggtatgaatgtactatagtttggaacagtgcaagttaggtaactctt |
18138166 |
T |
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| Q |
110 |
taggtatgctgctgattttgtattctagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatgtttctttggctttgttcttttat |
209 |
Q |
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| T |
18138165 |
tagatatcctg---attttgtatactagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatttttctttggcttcgttcttttat |
18138069 |
T |
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| Q |
210 |
catgttttgaggtttggtctttgtgag-caaacctattccaaat |
252 |
Q |
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| T |
18138068 |
catgttttgagg-ttggtctttgtgagaaaaacctattccaaat |
18138026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 18098195 - 18098397
Alignment:
| Q |
10 |
ataatactgcctaatatgaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttgcaacagtgcaagtttggtaactctt |
109 |
Q |
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| T |
18098195 |
ataatactgtctaataggaaatatcaatgcagaaattgaaaatttagaaggtaggtatcaatgtactatagtttggaacagtaaaagttagataactctt |
18098294 |
T |
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| Q |
110 |
taggtatgctgctgattttgtattctagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatgtttctttggctttgttcttttat |
209 |
Q |
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| T |
18098295 |
tag--atg-tcctgatt-----ttatagtaacatcttcccaggtcgggtttggtgaatccaagttctga---taatgtttctatggctttgttcttttat |
18098383 |
T |
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| Q |
210 |
catgttttgaggtt |
223 |
Q |
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| T |
18098384 |
cctgttttgaggtt |
18098397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 18082900 - 18082957
Alignment:
| Q |
10 |
ataatactgcctaatatgaaatataaatgcagaaattgaaaatttagaaggtaggtat |
67 |
Q |
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| T |
18082900 |
ataatactgcctaataggaaatatcaatgcagaaattgaaaatttagaaggtaggtat |
18082957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 15951824 - 15951735
Alignment:
| Q |
162 |
gtgaatccaatttctgatgttaatgtttctttggctttgttcttttatcatgttttgaggtttggtctttgtgagc-aaacctattccaaat |
252 |
Q |
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| T |
15951824 |
gtgaatccaatttctgatgttatt-tttcttcggcttcgttcttttatcatgtttaaagg-ttggtctttgtgagcaaaacctattccaaat |
15951735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 11547683 - 11547626
Alignment:
| Q |
27 |
gaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttg |
84 |
Q |
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| T |
11547683 |
gaaatataaatgcagaaattggaaatttagaaggtatgtatcaatgtactatagtttg |
11547626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 18082978 - 18083074
Alignment:
| Q |
124 |
attttgtattctagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatgtttctttggctttgttcttttatcatgttttgaggtt |
223 |
Q |
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| T |
18082978 |
attttgtatattaggaacatcttcccaggtcaggtttggtgaatccaagctctgat---aatgtttctatggctttgttcttttaacttgttttgaggtt |
18083074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 11552442 - 11552387
Alignment:
| Q |
29 |
aatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttg |
84 |
Q |
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| T |
11552442 |
aatataaatgcagaaattggaaatttaaaaggtacgtatcaatgtactatagtttg |
11552387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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