View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2050_low_1 (Length: 625)

Name: NF2050_low_1
Description: NF2050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2050_low_1
NF2050_low_1
[»] chr3 (14 HSPs)
chr3 (120-520)||(24144009-24144414)
chr3 (538-619)||(42394436-42394517)
chr3 (534-619)||(53581875-53581960)
chr3 (538-619)||(46941055-46941136)
chr3 (538-619)||(54237098-54237179)
chr3 (528-619)||(25413673-25413764)
chr3 (538-619)||(4190282-4190363)
chr3 (538-619)||(24688419-24688500)
chr3 (538-619)||(40808867-40808948)
chr3 (538-619)||(42100690-42100771)
chr3 (538-619)||(45126945-45127026)
chr3 (538-619)||(54246165-54246246)
chr3 (536-619)||(27748563-27748646)
chr3 (538-619)||(47191043-47191123)
[»] chr6 (9 HSPs)
chr6 (535-619)||(30735981-30736065)
chr6 (538-619)||(7273352-7273433)
chr6 (538-619)||(13743238-13743319)
chr6 (538-619)||(13748738-13748819)
chr6 (536-619)||(24204004-24204087)
chr6 (538-619)||(9698350-9698431)
chr6 (538-619)||(21279931-21280012)
chr6 (538-619)||(26670026-26670107)
chr6 (538-619)||(30014345-30014426)
[»] chr8 (15 HSPs)
chr8 (538-619)||(5754905-5754986)
chr8 (538-619)||(2546998-2547079)
chr8 (531-599)||(18066755-18066823)
chr8 (538-619)||(11582768-11582849)
chr8 (534-619)||(20148758-20148843)
chr8 (534-619)||(29800967-29801052)
chr8 (538-619)||(36743500-36743581)
chr8 (536-619)||(26125635-26125718)
chr8 (536-619)||(30912579-30912662)
chr8 (544-619)||(31384672-31384747)
chr8 (538-618)||(2165981-2166061)
chr8 (535-619)||(42295194-42295278)
chr8 (535-619)||(42699256-42699340)
chr8 (538-616)||(30660762-30660840)
chr8 (538-619)||(29705364-29705445)
[»] chr7 (14 HSPs)
chr7 (538-619)||(5015397-5015478)
chr7 (533-619)||(35069718-35069804)
chr7 (534-619)||(4638216-4638301)
chr7 (538-619)||(9216304-9216384)
chr7 (538-619)||(24001029-24001110)
chr7 (538-619)||(42538448-42538529)
chr7 (538-619)||(42972854-42972935)
chr7 (534-619)||(44326176-44326261)
chr7 (539-616)||(26898422-26898499)
chr7 (538-599)||(39998410-39998471)
chr7 (535-619)||(43343641-43343725)
chr7 (536-619)||(10573749-10573832)
chr7 (536-619)||(44416951-44417034)
chr7 (8-38)||(24558048-24558078)
[»] chr1 (9 HSPs)
chr1 (538-619)||(48498979-48499060)
chr1 (534-619)||(4401325-4401411)
chr1 (538-619)||(5489778-5489859)
chr1 (532-619)||(2497579-2497666)
chr1 (538-616)||(50448280-50448358)
chr1 (538-619)||(43571103-43571184)
chr1 (531-619)||(7447821-7447908)
chr1 (54-87)||(33038531-33038564)
chr1 (538-594)||(35000155-35000211)
[»] scaffold0157 (1 HSPs)
scaffold0157 (538-616)||(23441-23519)
[»] chr4 (15 HSPs)
chr4 (538-616)||(12496958-12497036)
chr4 (535-619)||(43514703-43514787)
chr4 (538-616)||(27550311-27550389)
chr4 (533-619)||(48463467-48463553)
chr4 (538-619)||(1771283-1771364)
chr4 (538-619)||(28982839-28982920)
chr4 (538-619)||(33703143-33703224)
chr4 (538-619)||(55966363-55966444)
chr4 (539-599)||(23204815-23204875)
chr4 (531-619)||(27893859-27893947)
chr4 (538-619)||(27864566-27864647)
chr4 (538-599)||(45490350-45490411)
chr4 (533-619)||(31680899-31680985)
chr4 (538-619)||(25051695-25051776)
chr4 (531-619)||(39631095-39631184)
[»] scaffold0038 (1 HSPs)
scaffold0038 (538-619)||(112657-112738)
[»] chr2 (7 HSPs)
chr2 (538-619)||(19047159-19047240)
chr2 (538-619)||(30838634-30838715)
chr2 (534-618)||(43490419-43490503)
chr2 (1-87)||(34888021-34888106)
chr2 (538-619)||(1750416-1750497)
chr2 (538-619)||(4764743-4764824)
chr2 (538-619)||(43335780-43335861)
[»] scaffold0119 (1 HSPs)
scaffold0119 (538-619)||(687-768)
[»] chr5 (6 HSPs)
chr5 (538-619)||(2614666-2614747)
chr5 (538-619)||(22512307-22512388)
chr5 (538-619)||(7617135-7617216)
chr5 (538-619)||(18033984-18034065)
chr5 (535-619)||(5256994-5257078)
chr5 (538-594)||(33855085-33855141)
[»] scaffold0187 (2 HSPs)
scaffold0187 (538-619)||(14205-14286)
scaffold0187 (538-619)||(24533-24614)


Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 120 - 520
Target Start/End: Complemental strand, 24144414 - 24144009
Alignment:
Q  120 ttaaggtttaatatatgctctacctcaact--ttctccttctaacaaattaaccactaatatttttctatataatgatttatagttataaatggtagcaa 217  Q
    ||||| |||||| |||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24144414 ttaagatttaatctatgctctacctcaactctttctccttctaacaaactaaccactaatatttttctatataatgatttatagttataaatgatagcaa 24144315  T
Q  218 taagaatttagtgagaaactttctaatatacatggacacattaaaccaaatgtttaagaggagactaaaattctagatttaaggtttattttctaagaac 317  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24144314 taagaatttagtgagaaactttctgatatacatagacaaattaaaccaaacgtttaagaggagactaaaattctagatttaaggtttattttctatgaac 24144215  T
Q  318 tgtcatattcattaagttgagaaagatgagattaaaattccaaatttaagaattaagggactaaaatcatatttcatcataattactttttagctaaaga 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||  ||||||||||||| |    
T  24144214 tgtcatattcattaagttgagaaagatgagattaaaattccaaatttaaaaattaagggactaaaatcgtatttcatcaaaatctctttttagctaaaaa 24144115  T
Q  418 ttttctgaacatgatatatgataagattttatggtgtccactgaagtatatagtcaatcaattccatctgct---aagtagatggatacaaagaagttta 514  Q
    |||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||   ||| |||||||||||||||||||||    
T  24144114 ttttttgaacatggtatatgataagattttatggagtccactgaagtatatagtcaatcaattccatctactaagaagaagatggatacaaagaagttta 24144015  T
Q  515 cataat 520  Q
    ||||||    
T  24144014 cataat 24144009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 42394517 - 42394436
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||||| |||||||| |  ||||||||| ||||  |||||| |||||||||||    
T  42394517 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcac 42394436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 619
Target Start/End: Complemental strand, 53581960 - 53581875
Alignment:
Q  534 tagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||||||| ||||||| |||| || ||||||||||  ||||||||| ||||  ||| || |||||||||||    
T  53581960 tagaaaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctcac 53581875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 46941055 - 46941136
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  |||||||||||||   |||||||| | |||||||||| ||||  |||||| |||||||||||    
T  46941055 aaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaagttcatctcac 46941136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 54237098 - 54237179
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||| | |||||||| |  ||||||||| ||||  |||||| |||||||||||    
T  54237098 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 54237179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 528 - 619
Target Start/End: Original strand, 25413673 - 25413764
Alignment:
Q  528 agattttagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||| ||| ||||||||||||||||||  ||||||||||||  | |||||||| || ||||||||| ||||  || ||| |||||||||||    
T  25413673 agattataggaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctcac 25413764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 4190363 - 4190282
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  |||| || ||||  |||||||||| || ||||||||||||||  ||||||  ||||||||||    
T  4190363 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctcac 4190282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 24688500 - 24688419
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  |||||| ||||| || |||||||| |  ||||||||| ||||  |||||| |||||||||||    
T  24688500 aaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctcac 24688419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 40808867 - 40808948
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||| |||||  ||||||||||||  | |||||||| | |||||||||| ||||  |||||| |||||||||||    
T  40808867 aaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctcac 40808948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 42100690 - 42100771
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||    |||||||| | |||||||||| ||||  |||||| |||||||||||    
T  42100690 aaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcac 42100771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 45127026 - 45126945
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||| |||||  ||||||| ||||| | |||||||| | |||||||||| ||||  |||||| |||||||||||    
T  45127026 aaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcac 45126945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 54246246 - 54246165
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||  | |||||||| |  ||||||||||||||  || ||| |||||||||||    
T  54246246 aaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctcac 54246165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 619
Target Start/End: Original strand, 27748563 - 27748646
Alignment:
Q  536 gaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||||||||||| |||||||| ||||    ||| |||| || ||||||||| ||||  |||||| |||||||||||    
T  27748563 gaaaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaagttcatctcac 27748646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 47191123 - 47191043
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||    |||||||| | |||||||||||||||  ||| || |||||||||||    
T  47191123 aaaatgttacatgaacaccctttattcctacacctcattgtaca-cccatgtattagagatattttgataagttcatctcac 47191043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 535 - 619
Target Start/End: Original strand, 30735981 - 30736065
Alignment:
Q  535 agaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||||||||||||||||||||||||||  | |||||||| |||||||||||| ||||  |||||| |||||||||||    
T  30735981 agaaaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttcatctcac 30736065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 7273433 - 7273352
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||   ||||||||| | |||||||||||||||  |||||| |||||||||||    
T  7273433 aaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctcac 7273352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 13743319 - 13743238
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||||||||| |||||||| ||||| | |||||||| | |||||||||| ||||  |||||| |||||||||||    
T  13743319 aaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcac 13743238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 13748819 - 13748738
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||||||||| |||||||| ||||| | |||||||| | |||||||||| ||||  |||||| |||||||||||    
T  13748819 aaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcac 13748738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 536 - 619
Target Start/End: Complemental strand, 24204087 - 24204004
Alignment:
Q  536 gaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||||  ||||||||||||  ||||||||||   |||||||||| ||||  |||||| |||||||||||    
T  24204087 gaaaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctcac 24204004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 9698431 - 9698350
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||| | |||||||| |  ||||||||| ||||  |||||| |||||||||||    
T  9698431 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 9698350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 21279931 - 21280012
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  |||||| |||||||| |||| ||||| |||||||||| ||||  ||||||  ||||||||||    
T  21279931 aaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaaattcatctcac 21280012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 26670107 - 26670026
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||    |||||||| |||||||||||| ||||  |||||| |||||||||||    
T  26670107 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcac 26670026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 30014345 - 30014426
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||| | ||| |||||| ||||||||||  |||  |||||| |||||||||||    
T  30014345 aaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaagttcatctcac 30014426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 5754905 - 5754986
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||||||||| |||||||||||||| | |||||||||| ||| |||||| ||||  |||||| |||||||||||    
T  5754905 aaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaagttcatctcac 5754986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 2546998 - 2547079
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||| |||||| ||||| || |||||||| |||||||||||| ||||  || ||| |||||||||||    
T  2546998 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctcac 2547079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 531 - 599
Target Start/End: Complemental strand, 18066823 - 18066755
Alignment:
Q  531 ttttagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagata 599  Q
    |||||| ||||||||||||||||||  |||| || |||||||||||||||||| |||||||||| ||||    
T  18066823 ttttaggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggata 18066755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 11582768 - 11582849
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||| | |||||||| |  ||||||||| ||||  |||||| |||||||||||    
T  11582768 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 11582849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 619
Target Start/End: Original strand, 20148758 - 20148843
Alignment:
Q  534 tagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||||||| |||||  ||||||| ||||| | |||||||| ||||| |||||| ||||  |||||| |||||||||||    
T  20148758 tagaaaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcac 20148843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 619
Target Start/End: Complemental strand, 29801052 - 29800967
Alignment:
Q  534 tagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||||||| |||||  ||||||| ||||| | |||||||| | |||||||||| ||||  |||||| |||||||||||    
T  29801052 tagaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcac 29800967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 36743581 - 36743500
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||| | |||||||| |  ||||||||| ||||  |||||| |||||||||||    
T  36743581 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 36743500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 536 - 619
Target Start/End: Original strand, 26125635 - 26125718
Alignment:
Q  536 gaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||||| |||||  ||||||| ||||||| |||||||| |  ||||||||| ||||  |||||| |||||||||||    
T  26125635 gaaaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctcac 26125718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 536 - 619
Target Start/End: Complemental strand, 30912662 - 30912579
Alignment:
Q  536 gaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||||  ||||||||||||  | ||||||||  ||||||||||| | ||  |||||| |||||||||||    
T  30912662 gaaaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaagttcatctcac 30912579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 544 - 619
Target Start/End: Original strand, 31384672 - 31384747
Alignment:
Q  544 ttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||  ||||||| |||||||||||||||| | ||||||||||  |||  |||||| |||||||||||    
T  31384672 ttacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttcatctcac 31384747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 538 - 618
Target Start/End: Complemental strand, 2166061 - 2165981
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 618  Q
    ||||| ||||||||||||  ||||||||||||  | |||||| | | |||||||||||||||  |||||| ||||||||||    
T  2166061 aaaatattacatgaacaccatttattcctacaccccattgtataccccatgtattagagatattttggtaagttcatctca 2165981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 619
Target Start/End: Original strand, 42295194 - 42295278
Alignment:
Q  535 agaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||||||||||||  ||||||||||||    ||||||||   |||||||||| ||||  |||||| |||||||||||    
T  42295194 agaaaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctcac 42295278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 619
Target Start/End: Original strand, 42699256 - 42699340
Alignment:
Q  535 agaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||||||||||||  ||||||||||||  | |||||||| || ||||||||  ||||  || ||| |||||||||||    
T  42699256 agaaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttttgtaagttcatctcac 42699340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 538 - 616
Target Start/End: Complemental strand, 30660840 - 30660762
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatct 616  Q
    ||||||||||||||||||  |||||| |||||| | |||||||| |  ||||||||| ||||  |||||| ||||||||    
T  30660840 aaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtattagggatattttggtaagttcatct 30660762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 29705364 - 29705445
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  |||||| |||||  | |||||||| | |||||||||| ||||  ||| || |||||||||||    
T  29705364 aaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttcatctcac 29705445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 5015397 - 5015478
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||| |||||| ||||| || |||||||| |||||||||||| ||||  |||||| |||||||||||    
T  5015397 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcac 5015478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 533 - 619
Target Start/End: Original strand, 35069718 - 35069804
Alignment:
Q  533 ttagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||| ||||||||||||||||||| ||||||||||||    |||||||| |||||||||||| ||||  |||||| |||||||||||    
T  35069718 ttaggaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcac 35069804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 619
Target Start/End: Complemental strand, 4638301 - 4638216
Alignment:
Q  534 tagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||||||||||||| |||||||| |||| || |||||||| | ||| |||||  ||||  |||||| |||||||||||    
T  4638301 tagaaaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctcac 4638216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 9216304 - 9216384
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  |||||||||| || |||||||||| | |||| ||||||||||  |||||| |||||||||||    
T  9216304 aaaatgttacatgaacaccctttattcctatatcctattgtaca-cccatgcattagagatattttggtaagttcatctcac 9216384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 24001110 - 24001029
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||| | |||||||| |  ||||||||| ||||  |||||| |||||||||||    
T  24001110 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 24001029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 42538529 - 42538448
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||| | |||||||| |  ||||||||| ||||  |||||| |||||||||||    
T  42538529 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 42538448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 42972854 - 42972935
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||| ||||||   |||||||||||| || |||||||| |||||||||||| ||||  |||||| |||||||||||    
T  42972854 aaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaagttcatctcac 42972935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 619
Target Start/End: Original strand, 44326176 - 44326261
Alignment:
Q  534 tagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||||||| |||||  ||||||| ||||| | |||||||| ||||| |||||| ||||  |||||| |||||||||||    
T  44326176 tagaaaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcac 44326261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 539 - 616
Target Start/End: Complemental strand, 26898499 - 26898422
Alignment:
Q  539 aaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatct 616  Q
    ||||||||||||||||| |||||||| ||||  | |||||||||  |||||||||| ||||  |||||| ||||||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaagttcatct 26898422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 599
Target Start/End: Original strand, 39998410 - 39998471
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagata 599  Q
    |||||||||||||||||| ||||| || ||||| |||||||||| | |||||||||| ||||    
T  39998410 aaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagggata 39998471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 619
Target Start/End: Complemental strand, 43343725 - 43343641
Alignment:
Q  535 agaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||||   |||||| |||||  |||||||||| | |||||||||| ||||  ||| || |||||||||||    
T  43343725 agaaaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcac 43343641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 619
Target Start/End: Original strand, 10573749 - 10573832
Alignment:
Q  536 gaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||||| |||||  ||||||| ||||| |||||||||| | ||||||||||  |||  ||||||  ||||||||||    
T  10573749 gaaaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctcac 10573832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 619
Target Start/End: Complemental strand, 44417034 - 44416951
Alignment:
Q  536 gaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||||||||||   |||||| |||||  |||||||||| | |||||||||| ||||  ||| || |||||||||||    
T  44417034 gaaaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcac 44416951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 38
Target Start/End: Complemental strand, 24558078 - 24558048
Alignment:
Q  8 gcgtgacttaagtcacgtggaaagtattttc 38  Q
    |||||||||||||||||||||||||||||||    
T  24558078 gcgtgacttaagtcacgtggaaagtattttc 24558048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 48499060 - 48498979
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||| |||||| ||||| || |||||||| |||||||||||| ||||  |||||| |||||||||||    
T  48499060 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcac 48498979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 534 - 619
Target Start/End: Original strand, 4401325 - 4401411
Alignment:
Q  534 tagaaaaatgttacatgaacact-ttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||| |||||||||||| ||||||||||||| |  |||||||| | |||||||||||||||  |||||| |||||||||||    
T  4401325 tagaaaaatgatacatgaacactcttttattcctacacttcattgtacaccccatgtattagagatattttggtaagttcatctcac 4401411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 5489778 - 5489859
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||| | |||||||| |  ||||||||| ||||  |||||| |||||||||||    
T  5489778 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 5489859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 532 - 619
Target Start/End: Complemental strand, 2497666 - 2497579
Alignment:
Q  532 tttagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||||||||| |||||  ||||||| ||||||| |||||||| | ||| |||||  ||||  |||||| |||||||||||    
T  2497666 tttagaaaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctcac 2497579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 538 - 616
Target Start/End: Complemental strand, 50448358 - 50448280
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatct 616  Q
    ||||||||||||||||||| |||||| ||||| || |||||||| || ||||||||| ||||  || ||| ||||||||    
T  50448358 aaaatgttacatgaacactctttatttctacactccattgtacaccttatgtattagggatatttttgtaagttcatct 50448280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 43571184 - 43571103
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||    |||||||| | |||||||||| ||||  |||||| |||||||||||    
T  43571184 aaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcac 43571103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 531 - 619
Target Start/End: Original strand, 7447821 - 7447908
Alignment:
Q  531 ttttagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||| |||||||||||||||||||   ||||||||||||| | |||||||| | ||||||||| |||||  ||| || |||||||||||    
T  7447821 tttttgaaaaatgttacatgaacatcctttattcctacatcccattgtaca-cccatgtattacagatattttgataagttcatctcac 7447908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 33038564 - 33038531
Alignment:
Q  54 agtgagcaatttctattatgagaagagcaatttt 87  Q
    ||||||||||||||||| ||||||||||||||||    
T  33038564 agtgagcaatttctattgtgagaagagcaatttt 33038531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 538 - 594
Target Start/End: Complemental strand, 35000211 - 35000155
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattag 594  Q
    |||||||||||||||||| ||||| || |||| ||||||||| |  |||||||||||    
T  35000211 aaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattag 35000155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 538 - 616
Target Start/End: Complemental strand, 23519 - 23441
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatct 616  Q
    ||||||||| ||||||||  |||||||||||| || |||||||||| |||||||||||||||  |||||| ||||||||    
T  23519 aaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatct 23441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 538 - 616
Target Start/End: Original strand, 12496958 - 12497036
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatct 616  Q
    ||||||||| ||||||||  |||||||||||| || |||||||||| |||||||||||||||  |||||| ||||||||    
T  12496958 aaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatct 12497036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 535 - 619
Target Start/End: Complemental strand, 43514787 - 43514703
Alignment:
Q  535 agaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||||||||||||  |||||||||||| || ||||||||  ||||||||||| | ||  |||||| |||||||||||    
T  43514787 agaaaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctcac 43514703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 538 - 616
Target Start/End: Original strand, 27550311 - 27550389
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatct 616  Q
    ||||||||||||||||||  |||||| ||||| || |||||||| |||||||||||| ||||  |||||| ||||||||    
T  27550311 aaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatct 27550389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 533 - 619
Target Start/End: Complemental strand, 48463553 - 48463467
Alignment:
Q  533 ttagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||| |||||||||||| |||||  ||||||| ||||||  |||||||||| |||||||||| ||||  |||||| |||||||||||    
T  48463553 ttaggaaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttcatctcac 48463467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 1771364 - 1771283
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||  | |||||||| | |||||||||||||||  ||| || |||||||||||    
T  1771364 aaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctcac 1771283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 28982920 - 28982839
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  |||||| |||||  |||||||||||| ||| |||||| ||||  |||||| |||||||||||    
T  28982920 aaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttcatctcac 28982839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 33703143 - 33703224
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  |||||| ||||||  ||||||||| | |||||||||| ||||  |||||| |||||||||||    
T  33703143 aaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcac 33703224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 55966444 - 55966363
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||| |||||  ||||||| ||||| | |||||||||| |||||||||| ||||  |||||| |||||||||||    
T  55966444 aaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctcac 55966363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 539 - 599
Target Start/End: Complemental strand, 23204875 - 23204815
Alignment:
Q  539 aaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagata 599  Q
    |||||||||||||||||| ||||||||||||| | ||||||||||  ||||||||| ||||    
T  23204875 aaatgttacatgaacactctttattcctacatcccattgtacatcctatgtattagggata 23204815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 531 - 619
Target Start/End: Complemental strand, 27893947 - 27893859
Alignment:
Q  531 ttttagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||| |||||  ||||||| ||||| | |||||||| | |||||||||| ||||  ||||||  ||||||||||    
T  27893947 ttttagaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcac 27893859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 27864566 - 27864647
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||| |||||  ||||||| ||||| | |||||||| | |||||||||| ||||  |||||| |||||||||||    
T  27864566 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcac 27864647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 599
Target Start/End: Complemental strand, 45490411 - 45490350
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagata 599  Q
    |||||||||||||||||| |||||||  ||||| | |||||||| |||||||||||| ||||    
T  45490411 aaaatgttacatgaacacattttatttatacatccaattgtacacctcatgtattagggata 45490350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 533 - 619
Target Start/End: Original strand, 31680899 - 31680985
Alignment:
Q  533 ttagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||| | |||||  ||||||| ||||||| |||||||| | | | |||||| ||||  |||||| |||||||||||    
T  31680899 ttagaaaaatgttacgtaaacaccatttattcatacattccattgtacaccccgtatattagggatattttggtaagttcatctcac 31680985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 25051695 - 25051776
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||| ||||||||||  ||||||||||||  | |||||||| |  ||||||||| ||||  |||||| |||||||||||    
T  25051695 aaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaagttcatctcac 25051776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 531 - 619
Target Start/End: Original strand, 39631095 - 39631184
Alignment:
Q  531 ttttagaaaaatgttacatgaacact-ttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||| |||||||| ||||||||| |  |||||||||||||    |||||||| |||||||||||| ||||  |||||| |||||||||||    
T  39631095 tttttgaaaaatgatacatgaacccccttttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcac 39631184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 112657 - 112738
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||||| |||||||| |  ||||||||| ||||  |||||| |||||||||||    
T  112657 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcac 112738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 19047159 - 19047240
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||||| |||||||| |  ||||||||| ||||  |||||| |||||||||||    
T  19047159 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcac 19047240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 30838634 - 30838715
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  |||||| ||||||  ||||||||| | |||||||||| ||||  |||||| |||||||||||    
T  30838634 aaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcac 30838715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 618
Target Start/End: Complemental strand, 43490503 - 43490419
Alignment:
Q  534 tagaaaaatgttacatgaacactttttattcctacattctattgtaca-tctcatgtattagagatagattggtatgttcatctca 618  Q
    ||||||||||||||||||||||  ||||||||||||| | |||||||| ||| ||||||||| ||||  |||||| ||||||||||    
T  43490503 tagaaaaatgttacatgaacaccctttattcctacatcccattgtacactct-atgtattagggatattttggtaagttcatctca 43490419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 34888021 - 34888106
Alignment:
Q  1 aacacatgcgtgacttaagtcacgtggaaagtattttcagaaattcaggtgggagtgagcaatttctattatgagaagagcaatttt 87  Q
    |||||||| |||||||||||||| | | | |||||||| ||| ||||| ||  |||||||||||||| || ||||||||||||||||    
T  34888021 aacacatgtgtgacttaagtcacattgga-gtattttcggaagttcagttgaaagtgagcaatttctgttgtgagaagagcaatttt 34888106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 1750416 - 1750497
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||  | |||||||| |  ||||||||| ||||  || ||| |||||||||||    
T  1750416 aaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcac 1750497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 4764824 - 4764743
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    |||||||||||| |||||  ||||||||||||  |||||||||| | ||||||||| | |||  ||||||  ||||||||||    
T  4764824 aaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaaattcatctcac 4764743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 43335861 - 43335780
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||| |||||||   ||||||||||||    |||||||||| |||||||||| ||||  |||||| |||||||||||    
T  43335861 aaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggtaagttcatctcac 43335780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 687 - 768
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||    |||||||| |||||||||||| ||||  |||||| |||||||||||    
T  687 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcac 768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 2614747 - 2614666
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||||||||| | |||||||| |  ||||||||| ||||  |||||| |||||||||||    
T  2614747 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 2614666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 22512307 - 22512388
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  |||||||||||| || ||||||||   |||||||||| ||||  |||||| |||||||||||    
T  22512307 aaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctcac 22512388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 7617135 - 7617216
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  ||||||| |||| || ||| |||| | |||||||||| ||||  |||||| |||||||||||    
T  7617135 aaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctcac 7617216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 18033984 - 18034065
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  |||||||||||| || |||||||| |  ||||||||| ||||  || ||| |||||||||||    
T  18033984 aaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctcac 18034065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 619
Target Start/End: Original strand, 5256994 - 5257078
Alignment:
Q  535 agaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||| |||||  ||||||| ||||| | |||||||| | |||||||||| ||||  ||||||  ||||||||||    
T  5256994 agaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcac 5257078  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 538 - 594
Target Start/End: Complemental strand, 33855141 - 33855085
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattag 594  Q
    ||||||||||||||||||  ||||||||||||  | |||||||| | ||||||||||    
T  33855141 aaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattag 33855085  T

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Target: scaffold0187 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 14286 - 14205
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  |||||| |||||  | ||||||||||  ||||||||| ||||  || ||| |||||||||||    
T  14286 aaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcac 14205  T

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Target: scaffold0187; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 24614 - 24533
Alignment:
Q  538 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcac 619  Q
    ||||||||||||||||||  |||||| |||||  | ||||||||||  ||||||||| ||||  || ||| |||||||||||    
T  24614 aaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcac 24533  T

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