View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2050_low_13 (Length: 303)
Name: NF2050_low_13
Description: NF2050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2050_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 3006830 - 3007097
Alignment:
| Q |
16 |
aaaagaacaggcgactgtggtatgatagtaagaactcttcgcaaatctactagtccgaatgtagaaatatcacatccatcaataatgattcttccgcttt |
115 |
Q |
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| T |
3006830 |
aaaagaacaggcgactgtggtatgatagtaagaactcttcgcaaatctactagtccgaatgtagaaatatcacatccatcaataatgattcttccgcttt |
3006929 |
T |
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| Q |
116 |
gcaattccacaatccggaacagtgcattaagcatgctagactttcctgcaccagttcttccaactacacctatcttctcagttgaaggcactacaaagga |
215 |
Q |
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| T |
3006930 |
gcaattccacaatccggaacagtgcattaagcatgctagactttcctgcaccagttcttccaactacacctatcttctcagttgaaggcactacaaagga |
3007029 |
T |
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| Q |
216 |
caatccatgcaagaccggaggaagttccggcctataactaagaacaacattctcaaactcaattgatc |
283 |
Q |
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| T |
3007030 |
caatccatgcaagaccggaggaagttccggcctataactaagaacaacattctcaaactcaattgatc |
3007097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 3030912 - 3031179
Alignment:
| Q |
16 |
aaaagaacaggcgactgtggtatgatagtaagaactcttcgcaaatctactagtccgaatgtagaaatatcacatccatcaataatgattcttccgcttt |
115 |
Q |
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| T |
3030912 |
aaaagaacgggggactgtggtatgatagtaagaactcttctcaagtctgctagtccgaacgtagaaatatcacatccatcaataatgattcttccacttt |
3031011 |
T |
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| Q |
116 |
gcaattccacaatccggaacagtgcattaagcatgctagactttcctgcaccagttcttccaactacacctatcttctcagttgaaggcactacaaagga |
215 |
Q |
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| T |
3031012 |
gtagttccacaatccgaaataacgcattaagcatgctagactttcctgcaccagttcttccaactacacctattttctccattgaagacactacaaagga |
3031111 |
T |
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| Q |
216 |
caatccatgcaagaccggaggaagttccggcctataactaagaacaacattctcaaactcaattgatc |
283 |
Q |
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| T |
3031112 |
caatccatgcaagaccggaggaagttccggcctatagctcaaaacaacattctcaaactcaattgatc |
3031179 |
T |
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