View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2050_low_15 (Length: 288)
Name: NF2050_low_15
Description: NF2050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2050_low_15 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 49004946 - 49004677
Alignment:
| Q |
19 |
gcaactacattgactaatcattacgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggag |
118 |
Q |
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| T |
49004946 |
gcaactacattgactaatcattacgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgctcggag |
49004847 |
T |
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| Q |
119 |
ttctttgatttcttcctgccatttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaacataaaaagtcaaaaactaacaat |
218 |
Q |
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| T |
49004846 |
ttctttgatttcttcctgccatttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaccataaaaagtcaaaaactaacaat |
49004747 |
T |
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| Q |
219 |
atttaaagtgaaagatagtttaaacattgaatgttcaatggtaacttcataactcacataatcagtttct |
288 |
Q |
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| T |
49004746 |
atttaaagtgaaagatagtttaaacattgaatgttcaatggtaacttcataactcacataatcagtttct |
49004677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 24 - 288
Target Start/End: Complemental strand, 38117138 - 38116875
Alignment:
| Q |
24 |
tacattgactaatcattacgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctt |
123 |
Q |
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| T |
38117138 |
tacattgactaatcattacgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctt |
38117039 |
T |
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| Q |
124 |
tgatttcttcctgccatttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaacataaaaagtcaaaaactaacaatattta |
223 |
Q |
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| T |
38117038 |
tgatttcttcctgccatttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaccataaaaagtcaaaaactaacaatattt- |
38116940 |
T |
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| Q |
224 |
aagtgaaagatagtttaaacattgaatgttcaatggtaacttcataactcacataatcagtttct |
288 |
Q |
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| T |
38116939 |
aagtgaaagatagtttaaacattgaatgttcaatggtaacttcattactcacataatcagtttct |
38116875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 23 - 288
Target Start/End: Complemental strand, 38160965 - 38160700
Alignment:
| Q |
23 |
ctacattgactaatcattacgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttct |
122 |
Q |
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| T |
38160965 |
ctacattgactaatcatttcgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcaagtgcacgcagttct |
38160866 |
T |
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| Q |
123 |
ttgatttcttcctgccatttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaacataaaaagtcaaaaactaacaatattt |
222 |
Q |
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| T |
38160865 |
ttgatttcttcctgccatttttcgacctgctccttgtgaatcctgcatattggaaagttaaaagaataacaccacaaaaagtcaaaaactaacaatatta |
38160766 |
T |
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| Q |
223 |
aaagtgaaagatagtttaaacattgaatgttcaatggtaacttcataactcacataatcagtttct |
288 |
Q |
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| T |
38160765 |
aaagtgaaagatagtttcagctttgaatgttcaatggtaacttcataactcgcataatcagtttct |
38160700 |
T |
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