View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2050_low_18 (Length: 247)

Name: NF2050_low_18
Description: NF2050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2050_low_18
NF2050_low_18
[»] chr8 (9 HSPs)
chr8 (77-240)||(26930905-26931068)
chr8 (165-240)||(26964164-26964239)
chr8 (11-71)||(26931137-26931197)
chr8 (77-134)||(26940025-26940082)
chr8 (77-134)||(26964236-26964293)
chr8 (11-71)||(26927578-26927638)
chr8 (165-216)||(26940079-26940129)
chr8 (11-71)||(26964482-26964542)
chr8 (11-71)||(26939886-26939946)
[»] chr5 (2 HSPs)
chr5 (150-204)||(36679845-36679899)
chr5 (11-63)||(36680676-36680728)
[»] chr1 (1 HSPs)
chr1 (12-71)||(29416196-29416255)


Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 77 - 240
Target Start/End: Complemental strand, 26931068 - 26930905
Alignment:
Q  77 tgattaattatgtcattaattgggtcattgagaatccttcatgtttaacacatggtatatgnnnnnnnnnnataacaggaaaatatatgtatgggcaagg 176  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||            ||| |||| | ||||||||||||||||    
T  26931068 tgattaattatgttattaattgggtcattgagaatccttcatgtttaacacatgatatatgtttttttttttaaacgggaatagatatgtatgggcaagg 26930969  T
Q  177 gtttttcataagttctctcaaaagttttagaggtgaaagaaaagactctttggtttactgttta 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  26930968 gtttttcataagttctctcaaaagttttagaggtgaaagaaaagactgtttggtttattgttta 26930905  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 26964239 - 26964164
Alignment:
Q  165 gtatgggcaagggtttttcataagttctctcaaaagttttagaggtgaaagaaaagactctttggtttactgttta 240  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  26964239 gtatgggcaagggtttttcataaattctcccaaaagttttagaggtgaaagaaaagactatttggtttactgttta 26964164  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 26931197 - 26931137
Alignment:
Q  11 gaagaagccgcatcttctcacacctgtttcttcccgcatctcaccaaattcaaccatccat 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26931197 gaagaagccgcatcttctcacacctgtttcttcccgcatctcaccaaattcaaccatccat 26931137  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 26940025 - 26940082
Alignment:
Q  77 tgattaattatgtcattaattgggtcattgagaatccttcatgtttaacacatggtat 134  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  26940025 tgattaattatgttattaattgggccattgagaatccttcatgtttaacacatggtat 26940082  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 26964293 - 26964236
Alignment:
Q  77 tgattaattatgtcattaattgggtcattgagaatccttcatgtttaacacatggtat 134  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  26964293 tgattaattatgttattaattgggccattgagaatccttcatgtttaacacatggtat 26964236  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 26927638 - 26927578
Alignment:
Q  11 gaagaagccgcatcttctcacacctgtttcttcccgcatctcaccaaattcaaccatccat 71  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| ||||    
T  26927638 gaagaagcagcatcttttcacacctgtttcttcctgcatctcaccaaattcaaccaaccat 26927578  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 26940079 - 26940129
Alignment:
Q  165 gtatgggcaagggtttttcataagttctctcaaaagttttagaggtgaaaga 216  Q
    |||||| |||||||||| ||||||||||||| ||||||||||||||||||||    
T  26940079 gtatggacaagggtttt-cataagttctctcgaaagttttagaggtgaaaga 26940129  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 26964542 - 26964482
Alignment:
Q  11 gaagaagccgcatcttctcacacctgtttcttcccgcatctcaccaaattcaaccatccat 71  Q
    ||||||| ||||||||||||||| |||||||| ||   |||||||||||||||||| ||||    
T  26964542 gaagaagacgcatcttctcacacttgtttctttccaagtctcaccaaattcaaccaaccat 26964482  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 26939886 - 26939946
Alignment:
Q  11 gaagaagccgcatcttctcacacctgtttcttcccgcatctcaccaaattcaaccatccat 71  Q
    ||||||||| ||||||||||||||| ||||||   ||  ||||||||||||||||| ||||    
T  26939886 gaagaagccacatcttctcacacctatttctttatgcggctcaccaaattcaaccaaccat 26939946  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 36679899 - 36679845
Alignment:
Q  150 aacaggaaaatatatgtatgggcaagggtttttcataagttctctcaaaagtttt 204  Q
    |||||||||| |||||||||||||||||||| || ||||||||||||||||||||    
T  36679899 aacaggaaaagatatgtatgggcaagggtttgtcgtaagttctctcaaaagtttt 36679845  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 36680728 - 36680676
Alignment:
Q  11 gaagaagccgcatcttctcacacctgtttcttcccgcatctcaccaaattcaa 63  Q
    ||||||||| ||||||||||| ||| ||||||||||| |||||| ||||||||    
T  36680728 gaagaagcctcatcttctcactcctatttcttcccgcgtctcacgaaattcaa 36680676  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 29416255 - 29416196
Alignment:
Q  12 aagaagccgcatcttctcacacctgtttcttcccgcatctcaccaaattcaaccatccat 71  Q
    |||||||| ||||||||||| ||||||||||||||| | |||||||||||||||| ||||    
T  29416255 aagaagcctcatcttctcactcctgtttcttcccgcgtttcaccaaattcaaccaaccat 29416196  T

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