View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2050_low_19 (Length: 243)
Name: NF2050_low_19
Description: NF2050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2050_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 63 - 209
Target Start/End: Original strand, 18083715 - 18083861
Alignment:
| Q |
63 |
gaagcacatttcatacaaagttagctatggaaaaccactaatgtcattaaagatttacaattgagtttatttataaactactaactgagaaattttgaac |
162 |
Q |
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| T |
18083715 |
gaagcacatttgatacaaagtaagctatggaaaaccacaaatgtcattaatgacttacaattgagtttatttataacatactaactgagaagttttgaac |
18083814 |
T |
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| Q |
163 |
ttaaaatccatctcatgtaagctgaagatttaaccatatatgtcaat |
209 |
Q |
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| T |
18083815 |
ttaaaatccatgtcgtgaaagccaaagatttaaccatatatgtcaat |
18083861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 18099162 - 18099325
Alignment:
| Q |
39 |
tttaagaagaaaatttagataactg-aagcacatttcatacaaagttagctatggaaaaccactaatgtcattaaagatttacaattgagtttatttata |
137 |
Q |
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| T |
18099162 |
tttaaaaagaaaatttagatcactggaagcacatttcatacaaagtaagctatggaaaaccacaaatgtcattaatgacttacaatcaag----tttata |
18099257 |
T |
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| Q |
138 |
aactactaactgagaaattttgaacttaaaatccatctcatgtaagctgaagatttaaccatatatgt |
205 |
Q |
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| T |
18099258 |
acacactaactgagaagtttttaacttaaaatccatgttgtgaaagccaaagatttaaccatatatgt |
18099325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 18108835 - 18108878
Alignment:
| Q |
187 |
aagatttaaccatatatgtcaatgatcactgttggtccttaatg |
230 |
Q |
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| T |
18108835 |
aagatttaaccatatatgtcaatgatcactgttggtccttaatg |
18108878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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