View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2050_low_2 (Length: 578)
Name: NF2050_low_2
Description: NF2050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2050_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 240 - 567
Target Start/End: Complemental strand, 4597431 - 4597104
Alignment:
| Q |
240 |
tttctccaaatacattttataattttttatctggagattgagaatgtagtcattgtagtggaatcttatttactttattaatgcatcaacatagttatat |
339 |
Q |
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| T |
4597431 |
tttctccaaatacattttataattttttatctggtgattgagaatgtagtcattgtagtggaatcttatttactttattaatgcatcaacatagttatat |
4597332 |
T |
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| Q |
340 |
gatctaagaccctcttccatttctttcacttgaactgaacccaccaagtccaaccatacaattgtatgatcaaacatgactaagaggccacaaatatatc |
439 |
Q |
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| T |
4597331 |
gatctaagaccctcttccatttctttcacctgaactgaacccaccaagtccaaccatacaattgtatgatcaaacatgactaagaggccacaaatatatc |
4597232 |
T |
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| Q |
440 |
ttttcggtgactcaatcactgaggaatcctttgatgttggaggatggggtgcttctcttgccaactttttctcacgcacggtaacatccattcttgcttt |
539 |
Q |
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| T |
4597231 |
tttttggtgactcaatcactgaggaatcctttgatgttggaggatggggtgcttctctttccaactttttctcacgcacagtaacatccattcttgcttt |
4597132 |
T |
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| Q |
540 |
cttttgctttaacaactcatattttcat |
567 |
Q |
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| T |
4597131 |
gttttgctttaacaactcatattttcat |
4597104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 4597736 - 4597503
Alignment:
| Q |
18 |
agttgtgcaatggcaaacaa-tgaaagatagaaggtaataaataatgtataacttatgtcnnnnnnnnnnngaaaga--------ggagaaatgatttat |
108 |
Q |
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| T |
4597736 |
agttgtgcaatggcaaacaaatgaaagatagaaggtaagaaataatgtataacttatgtcaaaaaaaaaaaaaaagaaaaaaagaggagaaatgatttat |
4597637 |
T |
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| Q |
109 |
aacaatgaaagataagaaataatttataaattttagagtagagcatagagtacataataagtaacctcaatgtaaaatagtccaatggatcattttaata |
208 |
Q |
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| T |
4597636 |
aacaatgaaagataagaaataatttataaattttagaatagagcatagagtacataataagtaacctcaatgtaaaatagtccaatggatcattttaata |
4597537 |
T |
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| Q |
209 |
tgggatagatggaacagtaaaacttatatttttt |
242 |
Q |
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| T |
4597536 |
tgggatagaaggaacagtaaaacttatatttttt |
4597503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 451 - 523
Target Start/End: Complemental strand, 4587651 - 4587579
Alignment:
| Q |
451 |
tcaatcactgaggaatcctttgatgttggaggatggggtgcttctcttgccaactttttctcacgcacggtaa |
523 |
Q |
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| T |
4587651 |
tcaatcactgaagaatcctttggtgttggaggatggggtgcttcttttgccaactatttctctcgtacggtaa |
4587579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 522
Target Start/End: Complemental strand, 4602206 - 4602122
Alignment:
| Q |
438 |
tcttttcggtgactcaatcactgaggaatcctttgatgttggaggatggggtgcttctcttgccaactttttctcacgcacggta |
522 |
Q |
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| T |
4602206 |
tcttttcggtgattcaatcactgaagattcattctctgttggaggatggggtgcttctcttgccaaccatttctctcgcacggta |
4602122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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