View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2050_low_22 (Length: 221)
Name: NF2050_low_22
Description: NF2050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2050_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 12249192 - 12249308
Alignment:
| Q |
15 |
atgaaactgacatgggattcaaaggttagtgataattggctattatgtgaaagggacagaaaaatcaataaataaagtttggaaaagtgttgaaaatcaa |
114 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||||||| |
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| T |
12249192 |
atgaaactgacattggattcaaaggttagtgataattggctattatgtgaaagggacagaaaaaacaaccaatgaagtttggaaaagagttgaaaatcaa |
12249291 |
T |
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| Q |
115 |
caacactactcaagttg |
131 |
Q |
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|||||| |||||||||| |
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| T |
12249292 |
caacaccactcaagttg |
12249308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 11994051 - 11993976
Alignment:
| Q |
133 |
tgattcatcctattccattttttggcccattctgcagcaaatctcggactttaagttgctgattcagtacaatgtg |
208 |
Q |
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| T |
11994051 |
tgattcatcctgttccattttttggcccattctgcagcaaatctcggactttaagttgctgattcagtacaatgtg |
11993976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 11994080 - 11994048
Alignment:
| Q |
15 |
atgaaactgacatgggattcaaaggttagtgat |
47 |
Q |
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| T |
11994080 |
atgaaactgacattggattcaaaggttagtgat |
11994048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 42129600 - 42129709
Alignment:
| Q |
22 |
tgacatgggattcaaaggttagtgataattggctattatgtgaaagggacagaaaaatcaataaataaagtttggaaaagtgttgaaaatcaacaacact |
121 |
Q |
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| T |
42129600 |
tgacattgggttcaaatgttaatgataattggctattatgtgaaagtgacagagttttcaaatattgaagtttggaaaagtgttgaaaatcaataacatc |
42129699 |
T |
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| Q |
122 |
actcaagttg |
131 |
Q |
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| T |
42129700 |
actcaagttg |
42129709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 34239926 - 34239826
Alignment:
| Q |
31 |
attcaaaggttagtgataattggctattatgtgaaagggacagaaaaatcaataaataaagtttggaaaagtgttgaaaatcaacaacactactcaagtt |
130 |
Q |
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| T |
34239926 |
attcaaagtttagtgataattggctattatgtgaaagggacagagaatccaatttttgaagttttgtaaagtcttgaaaattgacaacaccactcaagtt |
34239827 |
T |
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| Q |
131 |
g |
131 |
Q |
| |
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| T |
34239826 |
g |
34239826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 34232186 - 34232074
Alignment:
| Q |
19 |
aactgacatgggattcaaaggttagtgataattggctattatgtgaaagggacagaaaaatcaataaataaagtttggaaaagtgttgaaaatcaacaac |
118 |
Q |
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||||||||| |||||||||||||||||||||||| |||| ||||||||||||| | || ||| | ||||||| |||||||||||||| ||||| |
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| T |
34232186 |
aactgacattggattcaaaggttagtgataattgtgtattctgtgaaagggacaaagaatacaaattttgaagtttgccaaagtgttgaaaattgacaac |
34232087 |
T |
|
| Q |
119 |
actactcaagttg |
131 |
Q |
| |
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|| |||||||||| |
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| T |
34232086 |
accactcaagttg |
34232074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 41571391 - 41571279
Alignment:
| Q |
19 |
aactgacatgggattcaaaggttagtgataattggctattatgtgaaagggacagaaaaatcaataaataaagtttggaaaagtgttgaaaatcaacaac |
118 |
Q |
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||||||||| |||||||||| | |||||||||| ||||||||||||||||||||| || |||| | |||||||||||||| || ||||| |||| |
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| T |
41571391 |
aactgacattggattcaaagttcggtgataattgactattatgtgaaagggacagagaattcaaattttgaagtttggaaaagtatttaaaattgacaat |
41571292 |
T |
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| Q |
119 |
actactcaagttg |
131 |
Q |
| |
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|| |||||||||| |
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| T |
41571291 |
accactcaagttg |
41571279 |
T |
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