View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2050_low_3 (Length: 550)
Name: NF2050_low_3
Description: NF2050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2050_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 164 - 532
Target Start/End: Complemental strand, 9356608 - 9356235
Alignment:
| Q |
164 |
acatgagagaaaataacaaatttttcaagcaatttaaaggattaaatgaaaattattgttaaatgaggttaatgcaacttcaatcgaagttgcaaagaca |
263 |
Q |
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| T |
9356608 |
acatgagagaagattgcaaaattttcaagcaatttaaaggtttaaatgagaatcgttgttaaatgaggccgatgcagcttcaatcgaagttgtaaagaaa |
9356509 |
T |
|
| Q |
264 |
tgaaaaaatca-----gatatttcaattattgtcgtagtcgcggaccaatattaaaaattgtttgataagctaaaataaaggattcaaagtatacctatt |
358 |
Q |
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| T |
9356508 |
taaaaaaaaaaaatttgatattgcaattattgttctagccgcggaccaatatttaaaattgtttgataagataaactaaaggattcaaagtatacccatt |
9356409 |
T |
|
| Q |
359 |
tgtgaactagctaaaggcctagtgagattgagattgaattcatcaatgggacttgttatggcaaattttgctggtatttcatatgttagcttttcctttc |
458 |
Q |
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| T |
9356408 |
tgagaactaggtaaaggcctagtgaggttgagattggattcatcaatgggacttgtgatggcaaattttgctgggatttcatatgttagcttttcctttc |
9356309 |
T |
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| Q |
459 |
ttgcaatagatgatagtagttccctttgcctcctagccttgatcacatgaaaatgattcttcacagcattgtct |
532 |
Q |
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| T |
9356308 |
ttgcaatagatgataggagttccctttgcctcctagccttgatcacatggtaatgattctttagtgcattgtct |
9356235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 9348683 - 9348473
Alignment:
| Q |
17 |
tcaaaaaatggcatcttaatcttatctcccacattttcactgtcccccaaaattaatccattgttcttgtttgttgcaactggctcagatgctgaatctt |
116 |
Q |
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| T |
9348683 |
tcaaaaaatggcatcttaatcttatctcccacattttcactgtcccccaaaattaatccattgttcctgtttgttgcagctggctcagatgctgaatctt |
9348584 |
T |
|
| Q |
117 |
ctgagtttgaatctgaatgattggattggtccacaatataaactaaaacatgagagaaaataacaaatttttcaagcaatttaaaggattaaatgaaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9348583 |
ctgagtttgaatctgaatgattggattggtccgcaatataaactaaaacatgagagaaaataacaaatttttcaagcaatttaaaggattaaatgaaaat |
9348484 |
T |
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| Q |
217 |
tattgttaaat |
227 |
Q |
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||||||||||| |
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| T |
9348483 |
tattgttaaat |
9348473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 275 - 532
Target Start/End: Complemental strand, 9348467 - 9348210
Alignment:
| Q |
275 |
gatatttcaattattgtcgtagtcgcggaccaatattaaaaattgtttgataagctaaaataaaggattcaaagtatacctatttgtgaactagctaaag |
374 |
Q |
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|||||| |||||||||| ||| |||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| ||||| ||||||| ||||| |
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| T |
9348467 |
gatattgcaattattgttctagccgcggaccaatatttaaaattgtttgataagataaactaaaggattcaaagtatacccatttgagaactaggtaaag |
9348368 |
T |
|
| Q |
375 |
gcctagtgagattgagattgaattcatcaatgggacttgttatggcaaattttgctggtatttcatatgttagcttttcctttcttgcaatagatgatag |
474 |
Q |
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| T |
9348367 |
gcctagtgaggttgagattggattcatcaatgggacttgtgatggcaaattttgctgggatttcatatgttagcttttcctttcttgcaatagatgatag |
9348268 |
T |
|
| Q |
475 |
tagttccctttgcctcctagccttgatcacatgaaaatgattcttcacagcattgtct |
532 |
Q |
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| T |
9348267 |
gagttccctttgcctcctagccttgatcacatggtaatgattctttagtgcattgtct |
9348210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 9361667 - 9361533
Alignment:
| Q |
17 |
tcaaaaaatggcatcttaatcttatctcccacattttcactgtcccccaaaattaatccattgttcttgtttgttgcaactggctcagatgctgaatctt |
116 |
Q |
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|||| ||||| || |||||||||||||| ||||||||||| |||||||||||| ||||||||||| ||||||||||||||| ||||||| ||||| ||| |
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| T |
9361667 |
tcaataaatgacaccttaatcttatctctaacattttcactttcccccaaaattgatccattgttcatgtttgttgcaactgactcagatactgaaactt |
9361568 |
T |
|
| Q |
117 |
ctgagtttgaatctgaatgattggattggtccaca |
151 |
Q |
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| T |
9361567 |
ctgagtttgaatatgaatgattggattggtccaca |
9361533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 9356935 - 9356796
Alignment:
| Q |
17 |
tcaaaaaatggcatcttaatcttatctcccacattttcactgtcccccaaaattaatcc---attgttcttgtttgttgcaactggctcagatgctgaat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||| ||||||||||| | | |||||||| |||| |
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| T |
9356935 |
tcaaaaaatggcatcttaatcttatctcccacattttcactatcccctaaaattgatccattattgttcatgtttgttgcagcagactcagatgttgaac |
9356836 |
T |
|
| Q |
114 |
cttctgagtttgaatctgaatgattggattggtccacaat |
153 |
Q |
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| T |
9356835 |
cttctgagtttgaatctgaaatattggattggtccgcaat |
9356796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 425 - 534
Target Start/End: Complemental strand, 9360890 - 9360781
Alignment:
| Q |
425 |
tttgctggtatttcatatgttagcttttcctttcttgcaatagatgatagtagttccctttgcctcctagccttgatcacatgaaaatgattcttcacag |
524 |
Q |
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|||||||| |||| | ||||||||||| |||||||| ||||||||||| ||||||||||||| |||||||| | |||||||||||||||||||||| | |
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| T |
9360890 |
tttgctgggatttgaaatgttagctttctctttcttgaaatagatgataatagttccctttgcttcctagccataatcacatgaaaatgattcttcagtg |
9360791 |
T |
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| Q |
525 |
cattgtctgt |
534 |
Q |
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| T |
9360790 |
cattgtctgt |
9360781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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