View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2050_low_9 (Length: 402)
Name: NF2050_low_9
Description: NF2050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2050_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 40772075 - 40772458
Alignment:
| Q |
18 |
cctaccaacttagttaagctcacaattttatttgaagacaatattttattttacaagtgtaacaaagagggagtataaaatagtttgggggagtagaaaa |
117 |
Q |
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| T |
40772075 |
cctatcaacttagttaagctcacaattttatttgaagacaatattttattttacaagtgtgacaaagagggagtataaaatagtttgggggagtagaaaa |
40772174 |
T |
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| Q |
118 |
ctaattcaaagcattgacatagtctggaacacaatatagcacacaaatttatgaatccataactataactcatgatatataaaaagttaatttagaaatt |
217 |
Q |
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| T |
40772175 |
ctaattcaaagcattgacatagtctggaacacaatatagcacacaaatttatgaatccataactataactcatgatatataaaaaattaatttagaaatt |
40772274 |
T |
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| Q |
218 |
ccttctttgtaaagtaaaccagg------------acaatcacaatcactctcgatataatatactaacagtttaaagaaaatagactagtaaagaattg |
305 |
Q |
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| T |
40772275 |
ccttctttgtaaactaaaccaggacaatcacaatcacaatcacaatcactctcgatata--atactaacagtttaaagaaaatagactagtaaagaattg |
40772372 |
T |
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| Q |
306 |
cttttttctgttctggttcactcatattagtcaaaccagaatatttaattaaaatatttatatatcctctcttttcttctattcat |
391 |
Q |
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| T |
40772373 |
cttttttatgttctggttcactcatattagtcaaaacagaatatttaattaaaatatctatatatcctctcttttcttctattcat |
40772458 |
T |
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