View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20510_low_2 (Length: 476)
Name: NF20510_low_2
Description: NF20510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20510_low_2 |
 | |
|
| [»] scaffold0249 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 11168141 - 11168608
Alignment:
| Q |
1 |
ttattcgacagtgaagtagaagttgcaaggtcctaagcactaatgaattattacattctacctgcactgaatttattacagttgattatcaagctcattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11168141 |
ttattcgacagtgaagtagaagttgcaaggtcctaagcactaatgaattattacattctacctgcactgaatttattacatttgattatcaagctcattt |
11168240 |
T |
|
| Q |
101 |
gcaatgcatccaacatgtatctcccttttgattttccaattggtaagtaaaattatcattgtacagaatagaaagtacaatgcctaaattgtagcattga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11168241 |
gcaatgcatccaacatgtatctcccttttgattttccaattggtaagtaaaattatcattgtacagaatagaaagtacaatgcctaaattgtagcatgga |
11168340 |
T |
|
| Q |
201 |
ctttccttagcaagttcaaatat-ttttgataaaaaggaagcaatcagatattttgaaaatgtgatcacaatcgtggatttagaagaatataaatcaatg |
299 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11168341 |
ctttccttagcaagttcaaatatgttttgataaaaagtaagcaatcagatattttgaaaatgtgatcacaatcgtggatttagaagaatataaatcaatg |
11168440 |
T |
|
| Q |
300 |
cgatcactgagcttgaataaggatttgtcactgtcaatccttcataaatgttgttttttgatacactaaaaaaccaaaagcaatttatgaattatattgg |
399 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11168441 |
cgatcactgagtttgaataaggatttgtcactgtcaatccttcataaatgttgttttttgatacactaaaaaaccaaaagcaatttatgaattatattgg |
11168540 |
T |
|
| Q |
400 |
agcctgtgactgttaattttcgtgtagtgtagaggagctcaagttatttagtatgatcatgatgatgt |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11168541 |
agcctgtgactgttaattttcgtgtagtgtagaggagctcaagttatttagtatgatcatgatgatgt |
11168608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 313 - 467
Target Start/End: Original strand, 11207198 - 11207352
Alignment:
| Q |
313 |
tgaataaggatttgtcactgtcaatccttcataaatgttgttttttgatacactaaaaaaccaaaagcaatttatgaattatattggagcctgtgactgt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11207198 |
tgaataaggatttgtcactgtcaatccttcataaatgttgttttttgatacactaaaaaaccaaaagcaatttatgaattatattggagcctgtgactgt |
11207297 |
T |
|
| Q |
413 |
taattttcgtgtagtgtagaggagctcaagttatttagtatgatcatgatgatgt |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11207298 |
taattttcgtgtagtgtagaggagctcaagttatttagtatgatcatgatgatgt |
11207352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 417
Target Start/End: Complemental strand, 8743728 - 8743687
Alignment:
| Q |
376 |
aaagcaatttatgaattatattggagcctgtgactgttaatt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8743728 |
aaagcaatttatgaattatattggagcctgtgactgttaatt |
8743687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 13623542 - 13624011
Alignment:
| Q |
1 |
ttattcgacagtgaagtagaagttgcaaggtcctaagcactaatgaattattacattctacctgcactgaatttattacagttgattatcaagctcattt |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
13623542 |
ttattcgacagtgaagtagaagctgcaaggtcctaagcactaatgaattattacattatacctgcactgaatttattacacttgattaataagctcattt |
13623641 |
T |
|
| Q |
101 |
gcaatgcatccaacatgtatctcccttttgattttccaattggtaagtaaaattatcattgtacagaatagaaagtacaatgcctaaa--ttgtagcatt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13623642 |
gcaatgcatccaacatgtatctcccttttgattttccaattggtaagtaaaattatcattgtacagaatagaaagtacaatgcctaaaaattgtagcatg |
13623741 |
T |
|
| Q |
199 |
gactttccttagcaagttcaaatat-ttttgataaaaaggaagcaatcagatattttgaaaatgtgatcacaatcgtggatttagaagaatataaatcaa |
297 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
13623742 |
gactttccttagcaagttcaaatatgttttgataaaaaggaagcaatcagatattttgaaaatgtgataacaatcgtggatttagaagagtataaatcaa |
13623841 |
T |
|
| Q |
298 |
tgcgatcactgagcttgaataaggatttgtcactgtcaatccttcataaatgttgttttttgatacactaaaaaaccaaaagcaatttatgaattatatt |
397 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13623842 |
tgcgatcgctgagcttgaataaggatttgtcactgtcaatccttcataaatgttgttttttgatacactaaaaaaccaaaagcaatttatgaattatatt |
13623941 |
T |
|
| Q |
398 |
ggagcctgtgactgttaattttcgtgtagtgtagaggagctcaagttatttagtatgatcatgatgatgt |
467 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
13623942 |
ggagcctgtgactgttaattttcatgtagtgtagaggaggtcaagttattgagtatgatcatgatgatgt |
13624011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0249 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: scaffold0249
Description:
Target: scaffold0249; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 15 - 467
Target Start/End: Original strand, 19045 - 19498
Alignment:
| Q |
15 |
agtagaagttgcaaggtcctaagcactaatgaattattacattctacctgcactgaatttattacagttgattatcaagctcatttgcaatgcatccaac |
114 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19045 |
agtagaagctgcaaggtcctaagcactaatgaattattacattctacctgcactgaatttattacaattgattatcaagctcatttgcaatgcatccaac |
19144 |
T |
|
| Q |
115 |
atgtatctcccttttgattttccaattggtaagtaaaattatcattgtacagaatagaaagtacaatgcctaaattgtagcattgactttccttagcaag |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19145 |
atgtatctcccttttgattttccaattggtaagtaaaattatcattgtacagaatagaaagtacaatgcctaaattgtagcatggactttccttagcaag |
19244 |
T |
|
| Q |
215 |
ttcaaatat-ttttgataaaaaggaagcaatcagatattttgaaaatgtgatcacaatcgtggatttagaagaatataaatcaatgcgatcactgagctt |
313 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
19245 |
ttcaaatatgttttgataaaaagaaagcaatcagatattttgaaaatgtgatcacaatcgtggatttagaagagtataaatcaatgcgattgctgagctt |
19344 |
T |
|
| Q |
314 |
gaataaggatttgtcactgtcaatccttcataaatgttgttttttgatacactaaaaaaccaaaagcaatttatgaattatattggagcctgtgactgtt |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19345 |
gaataaggatttgtcactgtcaatccttcataaattttgttttttgatacactaaaaaaccaaaagcaatttatgaattatatcggagcctgtgactgtt |
19444 |
T |
|
| Q |
414 |
aattttcgtgtagtgtagaggagctcaagttatttagtatgatcatgatgatgt |
467 |
Q |
| |
|
|||| | ||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19445 |
aattctggtgtagtgtagtggagctcaagttattgagtatgatcatgatgatgt |
19498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 41050111 - 41050566
Alignment:
| Q |
1 |
ttattcgacagtgaagtagaagttgcaaggtcctaagcactaatgaattattacattctacctgcactgaatttattacagttgattatcaagctcattt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41050111 |
ttattcgacagtgaagtagaagctgcaaggtcctaagcactaatgaattattacattctacctgcactgaatttattacacttgattatcaagctcattt |
41050210 |
T |
|
| Q |
101 |
gcaatgcatccaacatgtatctcccttttgattttccaattggtaagtaaaattatcattgtacagaatagaaagtacaatgcct--aaattgtagcatt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
41050211 |
gcaatgcatccaacatgtatctcccttttgattttccaattggtaagtaaaattatcattgtacggaatagaaagtacaatgcctaaaaattgtagcatg |
41050310 |
T |
|
| Q |
199 |
gactttccttagcaagttcaaatat-ttttgataaaaaggaagcaatcagatattttgaaaatgtgatcacaatcgtggatttagaagaatataaatcaa |
297 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41050311 |
gactttccttagcaagttcaaatatgttttgataaaaaggaagcaatcagatattttgaaaatgtgatcacaatcgtggatttagaagagtataaatcaa |
41050410 |
T |
|
| Q |
298 |
tgcgatcactgagcttgaataaggatttgtcactgtcaatccttcataaatgttgttttttgatacactaaaaaaccaaaagcaatttatgaattatatt |
397 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41050411 |
tgcgatcgctgagct--------------ccactgtcaatccttcataaatgttgttttgtgatacactaaaaaaccaaaagcaatttatgaattatatt |
41050496 |
T |
|
| Q |
398 |
ggagcctgtgactgttaattttcgtgtagtgtagaggagctcaagttatttagtatgatcatgatgatgt |
467 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41050497 |
ggagcctgtgactgttaattctggtgtagtgtagtggagctcaagttattgagtatgatcatgatgatgt |
41050566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 21890279 - 21889828
Alignment:
| Q |
1 |
ttattcgacagtgaagtagaagttgcaaggtcctaagcactaatgaattattacattctacctgcactgaatttattacagttgattatcaagctcattt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21890279 |
ttattcgacagtgaagtagaagctgcaaggtcctaagcactaatgaattattacattctacctgcactgaatttattacacttgattatcaagctcattt |
21890180 |
T |
|
| Q |
101 |
gcaatgcatccaacatgtatctcccttttgattttccaattggtaagtaaaattatcattgtacagaatagaaagtacaatgcctaaattgtagcattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
21890179 |
gcaatgcatccaacatgtatctcccttttgattttccaatcggtaagtaaaattatcattgtacagaatagaaagtacaatgcct--attgtagcatgga |
21890082 |
T |
|
| Q |
201 |
ctttccttagcaagttcaaatat-ttttgataaaaaggaagcaatcagatattttgaaaatgtgatcacaatcgtggatttagaagaatataaatcaatg |
299 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21890081 |
ctttccttagcaagttcaaatatgttttgataaaaaggaagcaatcagatattttgaaaatgtgatcacaatcgtggatttagaagagtataaatcaatg |
21889982 |
T |
|
| Q |
300 |
cgatcactgagcttgaataaggatttgtcactgtcaatccttcataaatgttgttttttgatacactaaaaaaccaaaagcaatttatgaattatattgg |
399 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21889981 |
tgatcgctgagct--------------ccactgtcaatccttcataaatgttgttttgagatacactaaaaaaccaaaagcaatttatgaattatattgg |
21889896 |
T |
|
| Q |
400 |
agcctgtgactgttaattttcgtgtagtgtagaggagctcaagttatttagtatgatcatgatgatgt |
467 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21889895 |
agcctgtgactgttaattctggtgtagtgtagtggagctcaagttattgagtatgatcatgatgatgt |
21889828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 39585228 - 39585272
Alignment:
| Q |
242 |
aatcagatattttgaaaatgtgatcacaatcgtggatttagaaga |
286 |
Q |
| |
|
||||| |||||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
39585228 |
aatcaaatattttgaaaatgtgatcaaaatcatggatttaaaaga |
39585272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 22616206 - 22616072
Alignment:
| Q |
1 |
ttattcgacagtgaagtagaagttgcaaggtcctaagcactaatgaattattacattctacctgcactgaatttattacagttgattatcaagctcattt |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
22616206 |
ttattcgacagtgaagtagaagctgcaaggtcctaagcactaatgaactattacatgctacctgcactgaatttatttcacttgattatcaagctcattt |
22616107 |
T |
|
| Q |
101 |
gcaatgcatccaacatgtatctcccttttgatttt |
135 |
Q |
| |
|
| | |||||||||||||||||| |||| ||||||| |
|
|
| T |
22616106 |
ggattgcatccaacatgtatcttccttctgatttt |
22616072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 417
Target Start/End: Original strand, 1974854 - 1974904
Alignment:
| Q |
367 |
aaaaaaccaaaagcaatttatgaattatattggagcctgtgactgttaatt |
417 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1974854 |
aaaaaatccaaagcaatttatgaattatattggagcctgtgactgttaatt |
1974904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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