View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20510_low_4 (Length: 380)

Name: NF20510_low_4
Description: NF20510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20510_low_4
NF20510_low_4
[»] chr6 (6 HSPs)
chr6 (1-364)||(11167800-11168165)
chr6 (122-297)||(11165602-11165778)
chr6 (300-364)||(9460091-9460155)
chr6 (300-362)||(17260683-17260745)
chr6 (300-364)||(34886806-34886869)
chr6 (202-278)||(4425716-4425799)
[»] chr1 (15 HSPs)
chr1 (131-300)||(13623295-13623464)
chr1 (4-124)||(13623443-13623563)
chr1 (300-364)||(2348214-2348278)
chr1 (300-364)||(16052644-16052708)
chr1 (300-364)||(1171000-1171064)
chr1 (304-364)||(8079300-8079360)
chr1 (300-364)||(22887736-22887800)
chr1 (300-364)||(26579857-26579921)
chr1 (300-362)||(13996291-13996353)
chr1 (300-362)||(14004405-14004467)
chr1 (300-362)||(19714854-19714916)
chr1 (300-364)||(29696243-29696307)
chr1 (300-364)||(32672150-32672214)
chr1 (300-364)||(52088138-52088202)
chr1 (300-337)||(52087985-52088022)
[»] chr3 (11 HSPs)
chr3 (4-128)||(41050008-41050132)
chr3 (300-364)||(8043161-8043225)
chr3 (300-364)||(50528452-50528516)
chr3 (300-364)||(15518315-15518379)
chr3 (300-364)||(32359811-32359875)
chr3 (300-364)||(44689311-44689375)
chr3 (300-364)||(54869735-54869799)
chr3 (300-365)||(32244669-32244734)
chr3 (300-364)||(12916470-12916534)
chr3 (300-364)||(49129549-49129615)
chr3 (202-256)||(12157858-12157912)
[»] chr4 (13 HSPs)
chr4 (4-117)||(22616185-22616298)
chr4 (300-364)||(38055715-38055779)
chr4 (300-364)||(53408577-53408641)
chr4 (300-364)||(8590442-8590506)
chr4 (300-364)||(28032282-28032346)
chr4 (300-364)||(28360874-28360938)
chr4 (300-364)||(52139757-52139821)
chr4 (300-364)||(6688200-6688264)
chr4 (300-364)||(38070917-38070981)
chr4 (300-362)||(16704544-16704606)
chr4 (300-352)||(47632580-47632633)
chr4 (300-342)||(17494734-17494776)
chr4 (202-278)||(3839256-3839339)
[»] chr7 (14 HSPs)
chr7 (4-128)||(21890258-21890381)
chr7 (300-364)||(38867101-38867165)
chr7 (300-364)||(42964437-42964501)
chr7 (300-364)||(3511873-3511937)
chr7 (300-362)||(933845-933907)
chr7 (300-364)||(22649267-22649331)
chr7 (300-364)||(30180404-30180468)
chr7 (300-364)||(8631237-8631301)
chr7 (300-364)||(43407412-43407476)
chr7 (300-364)||(37004466-37004530)
chr7 (202-278)||(9226171-9226254)
chr7 (302-365)||(15655089-15655152)
chr7 (202-256)||(34130553-34130607)
chr7 (202-278)||(42244736-42244819)
[»] scaffold0249 (1 HSPs)
scaffold0249 (14-128)||(18931-19047)
[»] chr8 (6 HSPs)
chr8 (300-364)||(44804526-44804590)
chr8 (300-364)||(10836332-10836396)
chr8 (300-364)||(14423208-14423272)
chr8 (300-342)||(39221785-39221827)
chr8 (203-256)||(41907847-41907900)
chr8 (202-254)||(29434110-29434162)
[»] chr5 (7 HSPs)
chr5 (300-364)||(3386067-3386131)
chr5 (300-364)||(9007640-9007704)
chr5 (300-364)||(31883678-31883742)
chr5 (300-364)||(38597465-38597529)
chr5 (300-365)||(20988620-20988685)
chr5 (300-364)||(16069918-16069985)
chr5 (202-278)||(290738-290821)
[»] chr2 (10 HSPs)
chr2 (300-364)||(3872823-3872887)
chr2 (300-364)||(18806463-18806527)
chr2 (300-364)||(33905632-33905696)
chr2 (300-365)||(26322863-26322928)
chr2 (300-364)||(42938277-42938341)
chr2 (300-364)||(30419751-30419815)
chr2 (300-351)||(1109794-1109845)
chr2 (4-100)||(39645150-39645244)
chr2 (302-344)||(3585852-3585894)
chr2 (202-256)||(14753470-14753524)
[»] scaffold0920 (1 HSPs)
scaffold0920 (300-364)||(4273-4337)


Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 11168165 - 11167800
Alignment:
Q  1 caacttctacttcactgtcgaataaccc--aagatatatatacctacacaaaagcatcacaatctctataaccaaaccaaaacacctttgccaattcttt 98  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11168165 caacttctacttcactgtcgaataacccccaagatatatatacctacacaaaagcatcacaatctctataaccaaaccaaaacacctttgccaattcttt 11168066  T
Q  99 ctcaattcttagaaacatgtatgacactacctattctcagaaacatgtacgatattagtgcttcgtacggattgaataacgtgtttttgnnnnnnnnttg 198  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||        |||    
T  11168065 ctcaattctcagaaacatgtatgacactacctattctcagaaacatgtacgatattagtgcttcgcacgggttgaataacgtgtttttgaaaaaaaattg 11167966  T
Q  199 ctctaaaggagaaatgatcaaattacaaaaaatacctgcatctttctaagaaattgttataaatgtgaaaatcaagcaagttagaatagaaaatccttat 298  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11167965 ctctaaaggagaaatgatcaaattacaaaaaatatctgcatctttctaagaaattgttataaatgtgaaaatcaagcaagttagaatagaaaatccttat 11167866  T
Q  299 tagacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11167865 tagacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 11167800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 122 - 297
Target Start/End: Complemental strand, 11165778 - 11165602
Alignment:
Q  122 acactacctattctcagaaacatgtacgatattagtgcttcgtacggattgaataacgtgtttttgnnnnnnnn-ttgctctaaaggagaaatgatcaaa 220  Q
    ||||||||||||||||||||||| || || |||||||||||| || | ||||||||||||||||||         ||||||||||||| |||||||||||    
T  11165778 acactacctattctcagaaacatatatgacattagtgcttcgcaccggttgaataacgtgtttttgaaaaaaaaattgctctaaaggaaaaatgatcaaa 11165679  T
Q  221 ttacaaaaaatacctgcatctttctaagaaattgttataaatgtgaaaatcaagcaagttagaatagaaaatcctta 297  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11165678 ttacaaaaaatacctgcatctttttaagaaattgttataaatgtgaaaatcaagcaagttagaatagaaaatcctta 11165602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 9460155 - 9460091
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9460155 agacaaaattaacattcgaggtataaataaatagtctaaacatcattatacacaagtataataat 9460091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 17260683 - 17260745
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataata 362  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||    
T  17260683 agacaaaattaacattagaggtgtaaataaatagtctaaacatcatcatacacaaatataata 17260745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 34886869 - 34886806
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||  ||||||||||||||||||    
T  34886869 agacaaaattaatata-gaggtgtaaataaatagtctaaacatcaccatacacaagtataataat 34886806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 4425799 - 4425716
Alignment:
Q  202 taaaggagaaatgatcaaattacaaaaaatacctgcatctttctaagaaattgtt-------ataaatgtgaaaatcaagcaag 278  Q
    |||||||||||||| |||||||   |||||| |||||||||| ||||||||||||       ||||||||||||||||||||||    
T  4425799 taaaggagaaatgaacaaattaacgaaaatagctgcatctttttaagaaattgttgttgttcataaatgtgaaaatcaagcaag 4425716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 131 - 300
Target Start/End: Complemental strand, 13623464 - 13623295
Alignment:
Q  131 attctcagaaacatgtacgatattagtgcttcgtacggattgaataacgtgtttttgnnnnnnnnttgctctaaaggagaaatgatcaaattacaaaaaa 230  Q
    ||||||||||||||||| || |||||||||||| |||| ||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  13623464 attctcagaaacatgtatgacattagtgcttcgcacgggttgaataacgtgtttttgaaaaaaaattgctctaaaggagaaatgatcaaattacaaaaaa 13623365  T
Q  231 tacctgcatctttctaagaaattgttataaatgtgaaaatcaagcaagttagaatagaaaatccttatta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13623364 tacctgcatctttctaagaaattgttataaatgtgaaaatcaagcaagttagaatagaaaatccttatta 13623295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 13623563 - 13623443
Alignment:
Q  4 cttctacttcactgtcgaataacccaagatatatatacctacacaaaagcatcacaatctctataaccaaaccaaaacacctttgccaattctttctcaa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  13623563 cttctacttcactgtcgaataacccaagatatatatacctacacgaaagcatcgcaatctctataaccaaaccaaaacaccttcgccaattctttctcaa 13623464  T
Q  104 ttcttagaaacatgtatgaca 124  Q
    |||| ||||||||||||||||    
T  13623463 ttctcagaaacatgtatgaca 13623443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 2348278 - 2348214
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2348278 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 2348214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 16052708 - 16052644
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16052708 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 16052644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 1171064 - 1171000
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  1171064 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcatcatacacaaatataataat 1171000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 304 - 364
Target Start/End: Original strand, 8079300 - 8079360
Alignment:
Q  304 aaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8079300 aaaattaacattcgaggtgtaaataaatagtctaaacatcatcatacacaagtataataat 8079360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 22887736 - 22887800
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  22887736 agacaaaattaacattcgaggtgtaaataaataatctaaacatcatcatacacaagtataataat 22887800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 26579857 - 26579921
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  26579857 agacaaaattaacattcgagatgtaaataaatagtctaaacatcatcatacacaagtataataat 26579921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 13996291 - 13996353
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataata 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  13996291 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcatcatacacatgtataata 13996353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 14004405 - 14004467
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataata 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  14004405 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcatcatacacatgtataata 14004467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 19714854 - 19714916
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataata 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  19714854 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcatcatacacaggtataata 19714916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 29696307 - 29696243
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||| |||||||||||||||||||||||||||||   ||||||||||||||||    
T  29696307 agacaaaattaacattagaggtgtaaataaatagtctaaacatcatcccacacaagtataataat 29696243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 32672214 - 32672150
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    ||||||||||||||||  |||||||||||||||||||||||||||| |||||||| |||||||||    
T  32672214 agacaaaattaacattaaaggtgtaaataaatagtctaaacatcatcatacacaaatataataat 32672150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 52088202 - 52088138
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||| |||  |||||||||||||||||||||||| ||  ||||||||||||||||||    
T  52088202 agacaaaattaatattaaaggtgtaaataaatagtctaaacaacaccatacacaagtataataat 52088138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 52088022 - 52087985
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtcta 337  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  52088022 agacaaaattaacattagagatgtaaataaatagtcta 52087985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 41050132 - 41050008
Alignment:
Q  4 cttctacttcactgtcgaataacccaagatatatatacctacacaaaagcatcacaatctctataaccaaaccaaaacacctttgccaattctttctcaa 103  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  41050132 cttctacttcactgtcgaataacccaagatatatatacctgcacgaaagcatcgcaatttctataaccaaaccaaaacacctttgccaattctttctcaa 41050033  T
Q  104 ttcttagaaacatgtatgacactac 128  Q
    |||| |||||||||||||| |||||    
T  41050032 ttctcagaaacatgtatgatactac 41050008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 8043225 - 8043161
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8043225 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 8043161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 50528452 - 50528516
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50528452 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 50528516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 15518315 - 15518379
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15518315 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcatcatacacaagtataataat 15518379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 32359875 - 32359811
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32359875 agacaaaattaacattcgacgtgtaaataaatagtctaaacatcattatacacaagtataataat 32359811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 44689375 - 44689311
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44689375 agacaaaattaacattcgaggtgtaaataaatagtctatacatcattatacacaagtataataat 44689311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 54869735 - 54869799
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  54869735 agacaaaattaacattcgaggtgtaaataaatagtttaaacatcatcatacacaagtataataat 54869799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 300 - 365
Target Start/End: Complemental strand, 32244734 - 32244669
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataatg 365  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  32244734 agacaaaattaacattcgacgtgtaaataaatagtttaaacatcattatacacaaatataataatg 32244669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 12916534 - 12916470
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  12916534 agacaaaattaacattagaggtgtaaatacatagtctaaatatcatcatacacaagtataataat 12916470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 49129615 - 49129549
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataa--atagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||| ||  |||||||||||||  |||||||||||||||| ||||||||||||||||||    
T  49129615 agacaaaattaatatcagaggtgtaaataataatagtctaaacatcatcatacacaagtataataat 49129549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 12157858 - 12157912
Alignment:
Q  202 taaaggagaaatgatcaaattacaaaaaatacctgcatctttctaagaaattgtt 256  Q
    |||||||||||||| ||||||| |  ||||| |||||||||||||||||||||||    
T  12157858 taaaggagaaatgagcaaattaaaggaaataactgcatctttctaagaaattgtt 12157912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 22616185 - 22616298
Alignment:
Q  4 cttctacttcactgtcgaataacccaagatatatatacctacacaaaagcatcacaatctctataaccaaaccaaaacacctttgccaattctttctcaa 103  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22616185 cttctacttcactgtcgaataacccaagatatatatacctgcacgaaagcatcgcaatctctataaccaaaccaaaacacctttgccaattctttctcaa 22616284  T
Q  104 ttcttagaaacatg 117  Q
    |||| |||||||||    
T  22616285 ttctcagaaacatg 22616298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 38055779 - 38055715
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38055779 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 38055715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 53408641 - 53408577
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53408641 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 53408577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 8590442 - 8590506
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8590442 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcatcatacacaagtataataat 8590506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 28032282 - 28032346
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28032282 agacaaaattaacattcgaggtgtaaataaatagtctagacatcattatacacaagtataataat 28032346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 28360938 - 28360874
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28360938 agacaaaattaacattcgaagtgtaaataaatagtctaaacatcattatacacaagtataataat 28360874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 52139821 - 52139757
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52139821 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacataagtataataat 52139757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 6688200 - 6688264
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6688200 agacaaaattaatattcaaggtgtaaataaatagtctaaacatcattatacacaagtataataat 6688264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 38070917 - 38070981
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38070917 agacaaaattaacatttgaggtgtaaataaatagtctaaacatcatcatacacaagtataataat 38070981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 300 - 362
Target Start/End: Complemental strand, 16704606 - 16704544
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataata 362  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  16704606 agacaaaattaacattagaggtttaaataaatagtctaaacatcatcatacacaagtataata 16704544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 47632633 - 47632580
Alignment:
Q  300 agacaaaattaacatt-cgaggtgtaaataaatagtctaaacatcattatacac 352  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47632633 agacaaaattaacattgcgaggtgtaaataaatagtctaaacatcattatacac 47632580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 17494776 - 17494734
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacat 342  Q
    |||||||||||||||| || |||||||||||||||||||||||    
T  17494776 agacaaaattaacattagatgtgtaaataaatagtctaaacat 17494734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 3839256 - 3839339
Alignment:
Q  202 taaaggagaaatgatcaaattacaaaaaatacctgcatctttctaagaaattgtt-------ataaatgtgaaaatcaagcaag 278  Q
    |||||||||||||| |||||||    ||||| |||||||||||||||||||||||       ||||||||||||||||||||||    
T  3839256 taaaggagaaatgagcaaattaagggaaatagctgcatctttctaagaaattgttgttgttcataaatgtgaaaatcaagcaag 3839339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 21890258 - 21890381
Alignment:
Q  4 cttctacttcactgtcgaataacccaagatatatatacctacacaaaagcatcacaatctctataaccaaaccaaaacacctttgccaattctttctcaa 103  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||  |||||||||||||||||| |||||||||||||||||| || |||||    
T  21890258 cttctacttcactgtcgaataacccaagatatatatacctgcacgaaagcattgcaatctctataaccaaactaaaacacctttgccaatt-ttcctcaa 21890356  T
Q  104 ttcttagaaacatgtatgacactac 128  Q
    |||| |||||||||||||| |||||    
T  21890357 ttctcagaaacatgtatgatactac 21890381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 38867165 - 38867101
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38867165 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 38867101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 42964437 - 42964501
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42964437 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 42964501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 3511937 - 3511873
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3511937 agacaaaattaacatttgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 3511873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 300 - 362
Target Start/End: Complemental strand, 933907 - 933845
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataata 362  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  933907 agacaaaattaacattcgaggtgtaaataaatattctaaacatcattatacacaagtataata 933845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 22649267 - 22649331
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||    
T  22649267 agacaaaattaacattcgatgtgtaaataaatagtctaaacatcactatacagaagtataataat 22649331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 30180404 - 30180468
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  30180404 agacaaaattaacattagaggtgtaaataaatagtctaaacatcatcatacacaaatataataat 30180468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 8631301 - 8631237
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    ||||||||||||||||  || ||||||||||||||||||||||||| |||||||| |||||||||    
T  8631301 agacaaaattaacattaaagatgtaaataaatagtctaaacatcatcatacacaaatataataat 8631237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 43407476 - 43407412
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||| ||  |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  43407476 agacaaaattaatatcagaggtgtaaataaataatctaaacatcatcatacacaagtataataat 43407412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 37004466 - 37004530
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||| ||  ||||| |||||||||||||||||||||||  |||||||||||||||||    
T  37004466 agacaaaattaatatcagaggtataaataaatagtctaaacatcatcgtacacaagtataataat 37004530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 9226171 - 9226254
Alignment:
Q  202 taaaggagaaatgatcaaattacaaaaaatacctgcatctttctaagaaattgtt-------ataaatgtgaaaatcaagcaag 278  Q
    |||||||||||||| |||||||    ||||| |||||||||||||||||||||||       ||||||||||||||||||||||    
T  9226171 taaaggagaaatgagcaaattaagggaaataactgcatctttctaagaaattgttgtcgttcataaatgtgaaaatcaagcaag 9226254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 365
Target Start/End: Original strand, 15655089 - 15655152
Alignment:
Q  302 acaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataatg 365  Q
    ||||||||||||||  |||| |||||||||||||||||||||| ||| | || ||| |||||||    
T  15655089 acaaaattaacattataggtataaataaatagtctaaacatcactattctcatgtaaaataatg 15655152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 34130607 - 34130553
Alignment:
Q  202 taaaggagaaatgatcaaattacaaaaaatacctgcatctttctaagaaattgtt 256  Q
    |||||||||||||| |||||||  ||||||| |||||| || |||||||||||||    
T  34130607 taaaggagaaatgagcaaattaagaaaaatagctgcattttcctaagaaattgtt 34130553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 42244736 - 42244819
Alignment:
Q  202 taaaggagaaatgatcaaattacaaaaaatacctgcatctttctaagaaattg-------ttataaatgtgaaaatcaagcaag 278  Q
    |||||||||||||| |||||||   |||||| || ||||||||||||||||||       | ||||||||||||||||||||||    
T  42244736 taaaggagaaatgagcaaattaaggaaaatagctacatctttctaagaaattgctgtcattcataaatgtgaaaatcaagcaag 42244819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 19047 - 18931
Alignment:
Q  14 actgtcgaataacccaagatatatata--cctacacaaaagcatcacaatctctataaccaaaccaaaacacctttgccaattctttctcaattcttaga 111  Q
    |||||||||||||||||||||||||||  ||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  19047 actgtcgaataacccaagatatatatatacctgcaagaaagcatcacaatctctataaccaaaccaaaacacctttgccaattctttctcaattctcaaa 18948  T
Q  112 aacatgtatgacactac 128  Q
    ||||||||||| |||||    
T  18947 aacatgtatgatactac 18931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 44804526 - 44804590
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44804526 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 44804590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 10836332 - 10836396
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  10836332 agacaaaattaacattcgagctgtaaataaattgtctaaacatcattatacacaagtataataat 10836396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 14423272 - 14423208
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    ||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||    
T  14423272 agacaaaattaacattcaaagtgtaaataaatagtctaaacatcatcatacacaagtataataat 14423208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 39221827 - 39221785
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacat 342  Q
    |||||||||||||||| || |||||||||||||||||||||||    
T  39221827 agacaaaattaacattagatgtgtaaataaatagtctaaacat 39221785  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 41907900 - 41907847
Alignment:
Q  203 aaaggagaaatgatcaaattacaaaaaatacctgcatctttctaagaaattgtt 256  Q
    ||||||||||||| |||||||    ||||| |||||||||||||||||||||||    
T  41907900 aaaggagaaatgagcaaattaagggaaatagctgcatctttctaagaaattgtt 41907847  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 29434162 - 29434110
Alignment:
Q  202 taaaggagaaatgatcaaattacaaaaaatacctgcatctttctaagaaattg 254  Q
    |||||||||||||| |||||||    ||||| |||||||||||||||||||||    
T  29434162 taaaggagaaatgagcaaattaagggaaatagctgcatctttctaagaaattg 29434110  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 3386067 - 3386131
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3386067 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 3386131  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 9007640 - 9007704
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9007640 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 9007704  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 31883742 - 31883678
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    ||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31883742 agacaaaattaactttagaggtgtaaataaatagtctaaacatcatcatacacaagtataataat 31883678  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 38597465 - 38597529
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||    
T  38597465 agacaaaattaacattagaggtgtaaataaatagtctaaacatcatcaaacacaagtataataat 38597529  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 365
Target Start/End: Original strand, 20988620 - 20988685
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataatg 365  Q
    ||||||||||||||||  |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  20988620 agacaaaattaacattaaaggtgtaaataaatagtctaaacatcatcatacacaaatataataatg 20988685  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 16069985 - 16069918
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaaca---tcattatacacaagtataataat 364  Q
    |||||||||||||||||||||| |||||||||||||||||||   |||| ||||||||||||||||||    
T  16069985 agacaaaattaacattcgaggtctaaataaatagtctaaacatcatcatcatacacaagtataataat 16069918  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 290821 - 290738
Alignment:
Q  202 taaaggagaaatgatcaaattacaaaaaatacctgcatctttctaagaaattg-------ttataaatgtgaaaatcaagcaag 278  Q
    |||||||||||||| |||||||    ||||| |||||||||||||||||||||       | ||||||||||||||||||||||    
T  290821 taaaggagaaatgagcaaattaagggaaatagctgcatctttctaagaaattgatgccgttcataaatgtgaaaatcaagcaag 290738  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 3872823 - 3872887
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3872823 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 3872887  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 18806463 - 18806527
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18806463 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 18806527  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 33905632 - 33905696
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33905632 agacaaaattaacatttgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 33905696  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 300 - 365
Target Start/End: Original strand, 26322863 - 26322928
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataatg 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  26322863 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcatcatacacaagtatattaatg 26322928  T

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Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 42938341 - 42938277
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42938341 agacaaaattaacattagaggtgtaaataaatagtctaaacatcatcatacacaagtataataat 42938277  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 30419751 - 30419815
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  30419751 agacaaaattaacattagaggtgtaaataaatagtctaaacatcatcatacacaaatataataat 30419815  T

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Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 300 - 351
Target Start/End: Complemental strand, 1109845 - 1109794
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattataca 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1109845 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattataca 1109794  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 39645244 - 39645150
Alignment:
Q  4 cttctacttcactgtcgaataacccaagatatatatacctacacaaaagcatcacaatctctataaccaaaccaaaacacctttgccaattctttct 100  Q
    |||||||||| |||||||||| |||||||||||||||||| ||  ||| |||  |||| ||||||||  ||| |||||||||||||||||| |||||    
T  39645244 cttctacttcgctgtcgaatagcccaagatatatatacctgcatgaaatcattgcaatatctataac--aacaaaaacacctttgccaattgtttct 39645150  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 344
Target Start/End: Complemental strand, 3585894 - 3585852
Alignment:
Q  302 acaaaattaacattcgaggtgtaaataaatagtctaaacatca 344  Q
    ||||||||||||||  ||||||| |||||||||||||||||||    
T  3585894 acaaaattaacattaaaggtgtagataaatagtctaaacatca 3585852  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 14753524 - 14753470
Alignment:
Q  202 taaaggagaaatgatcaaattacaaaaaatacctgcatctttctaagaaattgtt 256  Q
    |||||||||||||| |||||||    ||||| |||||||||||||||||||||||    
T  14753524 taaaggagaaatgagcaaattaagggaaatagctgcatctttctaagaaattgtt 14753470  T

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Target: scaffold0920 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0920
Description:

Target: scaffold0920; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 4337 - 4273
Alignment:
Q  300 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacacaagtataataat 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4337 agacaaaattaacattcgaggtgtaaataaatagtctaaacatcattatacgcaagtataataat 4273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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