View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20510_low_6 (Length: 286)
Name: NF20510_low_6
Description: NF20510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20510_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 8706880 - 8707138
Alignment:
| Q |
18 |
aatactgtgcatcaaaattgttgaaatcaacacatggtaatgttcatggaagcacctgttttcaatctttaaagaacggtgaaattgaagacaacaacga |
117 |
Q |
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| T |
8706880 |
aatactgtgcatcaaaattgttgaaatcaacacatggtaatgttcatggaagcacctgttttcaatctttaaagaacggtgaaattgaagacaacaacga |
8706979 |
T |
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| Q |
118 |
gagtacctttcaagattattttgggggattagaggcatcctcttgtgattcaactacagatatacctttggagatgatcaattgtattaaaatatctagt |
217 |
Q |
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| T |
8706980 |
gagtacctttcaagattattttgggggattagaggcatcctcttgtgattcaactgcagatatacctttggagatgatcaattgtattaaaatatctagt |
8707079 |
T |
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| Q |
218 |
tcgccttccactctaagaaaacgcaaaaaccagtatcatccaagaccagccatcttcat |
276 |
Q |
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| T |
8707080 |
tcgccttccactctaagaaaacacaaaaaccagtatcatccaagaccagccatcttcat |
8707138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 135 - 276
Target Start/End: Original strand, 8692132 - 8692273
Alignment:
| Q |
135 |
attttgggggattagaggcatcctcttgtgattcaactacagatatacctttggagatgatcaattgtattaaaatatctagttcgccttccactctaag |
234 |
Q |
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| T |
8692132 |
atttcgggggattggaggcatcctcttgtgactcatctgcagataaacctctagagatgatcaattgttttgaaatttctagtgcaccttccactctaag |
8692231 |
T |
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| Q |
235 |
aaaacgcaaaaaccagtatcatccaagaccagccatcttcat |
276 |
Q |
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| T |
8692232 |
aagaaacaaaaaccagtatcatccaagaccagccaccttcat |
8692273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 125 - 276
Target Start/End: Complemental strand, 14384632 - 14384481
Alignment:
| Q |
125 |
tttcaagattattttgggggattagaggcatcctcttgtgattcaactacagatatacctttggagatgatcaattgtattaaaatatctagttcgcctt |
224 |
Q |
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|||| |||| |||| |||||||| ||||||||||||||||| |||||| |||||| |||| |||||||||||||| | |||| || ||| | |||| |
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| T |
14384632 |
tttcgagatgatttcgggggattggaggcatcctcttgtgactcaactgcagataaacctcaaaagatgatcaattgttatgaaatttccagtgcacctt |
14384533 |
T |
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| Q |
225 |
ccactctaagaaaacgcaaaaaccagtatcatccaagaccagccatcttcat |
276 |
Q |
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| T |
14384532 |
ccactctaagaagaaacaaaaaccagtatcatccaagaccagccaccttcat |
14384481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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