View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20511_high_5 (Length: 315)

Name: NF20511_high_5
Description: NF20511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20511_high_5
NF20511_high_5
[»] chr1 (1 HSPs)
chr1 (16-310)||(47591077-47591371)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 47591371 - 47591077
Alignment:
Q  16 caattcttcgagaaaatggtggtgattaattaatctaaattggttgagaagtaagtaaaggcataacnnnnnnnnttcaccttagaattgaactcaggta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||        |||||||||||||||||||||||||    
T  47591371 caattcttcgagaaaatggtggtgattaattaatctaaattggttgagaagtaagtaaaggcacaacaaaaaaaattcaccttagaattgaactcaggta 47591272  T
Q  116 caagccaaactattcaattcaactttagatgaagtgcagacaccacttgagttctattacttgattatcattgattttttatatggcttgaagatatttt 215  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47591271 caagccaaactattcaattcaactttagatgaagttcagacaccacttgagttctattacttgattatcattgattttttatatggcttgaagatatttt 47591172  T
Q  216 ggaagagagatagatgaattgagtcatgtaatattagttgaatgaaacttcacctttaattgttggaggagggctaacttgcccaaacatctctg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47591171 ggaagagagatagatgaattgagtcatgtaatattagttgaatgaaacttcacctttaattgttggaggagggctaacttgcccaaacatctctg 47591077  T

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