View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20511_low_1 (Length: 598)
Name: NF20511_low_1
Description: NF20511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20511_low_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 147 - 598
Target Start/End: Original strand, 39525632 - 39526083
Alignment:
| Q |
147 |
tatcagtttattatctgcaatcttacataaagggactaaaactgtattagaaaataaaataactaataatcaaattcattttttcattttatcttacatc |
246 |
Q |
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| T |
39525632 |
tatcagtttattatctgcaatcttacataaagggactaaaactgtattagaaaataaaataactaataatcaaattcattttttcattttatcttacatc |
39525731 |
T |
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| Q |
247 |
aaaaacattattgctaagatctaagccctaccaaactaaactgaagagcattggtacacaagcacgtttgggtttggcctaggtgcatatttccattttg |
346 |
Q |
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| T |
39525732 |
aaaaacattattgctaagatctaagccctaccaaactaaactgaagagcattggtacacaagcacgtttgggtttggcctaggtgcatatttccattttg |
39525831 |
T |
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| Q |
347 |
gttgccaagccaataattgtgtcaagtgaacagactcgtgacttgttgtgaatagcactgtttagcacgaacaacctccaccttgctgctctgtcctgga |
446 |
Q |
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| T |
39525832 |
gttgccaagccaataattgtgtcaagtgaacagactcgtgacttgttgtgaatagcactgtttagcacgaacaacctccaccttgctgctctgtcctgga |
39525931 |
T |
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| Q |
447 |
tgaatacgcggtagattttaaatttacatcaaccatgtcatcttgctttgttgaaagagattccatcccgggcaaggctgaagcaatcttgcgaaataaa |
546 |
Q |
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| T |
39525932 |
tgaatacgcggtagattttaaatttacatcaaccatgtcatcttgctttgttgaaagagattccatcccgggcaaggctgaagcaatcttgcgaaataaa |
39526031 |
T |
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| Q |
547 |
ggctgcaacattttaatcactcgagttaatatgaacacgataaagtgacggc |
598 |
Q |
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| T |
39526032 |
ggctgcaacattttaatcactcgagttaatatgaacacgataaagtgacggc |
39526083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 39525464 - 39525585
Alignment:
| Q |
11 |
gtgagatgaaaccatggaactcatcatgtaaaaccaatattccgcatgataaaatttcaatgaaacacagtttatgctgtaaagcatgacaacgcttggt |
110 |
Q |
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| T |
39525464 |
gtgagatgaaaccatggaactcatcatgtaaaaccaatattccgcatgataaaatttcaatgaaacacagtttatgcagtaaagcatgacaacgcttggt |
39525563 |
T |
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| Q |
111 |
cgataaaatccttccaacaaag |
132 |
Q |
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| T |
39525564 |
cgataaaatccttccaacaaag |
39525585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 418 - 552
Target Start/End: Original strand, 37852069 - 37852206
Alignment:
| Q |
418 |
caacctccaccttgctgctctgtcctggatgaatacgcggtagattttaaatttacatcaaccatgtcatcttgctttgttgaa---agagattccatcc |
514 |
Q |
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|||||||| || ||||||||||| ||||||||| | | || | |||||||||||| ||||||||||| || | ||||| ||| || | |||||||| |
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| T |
37852069 |
caacctcctccctgctgctctgtattggatgaatgcactgtgggttttaaatttacgtcaaccatgtcttccttatttgtagaagaaagggtttccatcc |
37852168 |
T |
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| Q |
515 |
cgggcaaggctgaagcaatcttgcgaaataaaggctgc |
552 |
Q |
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| T |
37852169 |
ctggcaaggcggaagcaatcttacgaaacaaaggctgc |
37852206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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