View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20511_low_2 (Length: 390)
Name: NF20511_low_2
Description: NF20511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20511_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 374
Target Start/End: Original strand, 45685086 - 45685442
Alignment:
| Q |
16 |
ctgtgacgagttccttatctttctttccatattatatttaaatatattaggtttttaaattgagcctaactctttgtaaacgcatttcaggccttatctt |
115 |
Q |
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| T |
45685086 |
ctgtgacgagttccttatctttctttccatattatatttaaatatattaggtttttaaattgagcctaactctttgtaaacgcatttcaggccttatctt |
45685185 |
T |
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| Q |
116 |
tactctttgtaaacgatctcatggtattaatctttgcagtgatacagtgtctaaattttcagaaatctaaaatttgtttgctcnnnnnnnncataaatgg |
215 |
Q |
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| T |
45685186 |
tactctttgtaaacgatctcatggtattaatctttgcagtgat--agtgtttaaattttcagaaatctaaaatttgtttgctcaacaaaaacataaatgg |
45685283 |
T |
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| Q |
216 |
accacatgtaagctgaaaattctagagagaagaggttatcaatctataatgaatctgttgaaaatatattctgatatatgtacttattgtataggcatat |
315 |
Q |
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| T |
45685284 |
accacatgtaagctgaaaattctagagagaagaggttatcaatctataatgaatctgttgaaaatatattctgatatatgtacttattgtataggcatat |
45685383 |
T |
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| Q |
316 |
catatcaagtaaatagggatagaattgcctatatttatatttgtaatttttgctttgag |
374 |
Q |
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| T |
45685384 |
catatcaagtaaatagggatagaattgcctatatttatatttgtaatttttgctttgag |
45685442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 340
Target Start/End: Original strand, 13178327 - 13178398
Alignment:
| Q |
269 |
tctgttgaaaatatattctgatatatgtacttattgtataggcatatcatatcaagtaaatagggatagaat |
340 |
Q |
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| T |
13178327 |
tctgttgaacatatattatgatctttgtatttattgtataagcatatcatatcatgtagatagggatagaat |
13178398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 271 - 337
Target Start/End: Original strand, 34392214 - 34392280
Alignment:
| Q |
271 |
tgttgaaaatatattctgatatatgtacttattgtataggcatatcatatcaagtaaatagggatag |
337 |
Q |
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| T |
34392214 |
tgttgaaaatatattatgaccattgtatttattgtataggaatatcatatcaagtaaatagggatag |
34392280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 49931894 - 49931942
Alignment:
| Q |
279 |
atatattctgatatatgtacttattgtataggcatatcatatcaagtaa |
327 |
Q |
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| T |
49931894 |
atatattatgatctttgtatttattgtataggcatatcatatcatgtaa |
49931942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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