View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20511_low_3 (Length: 363)

Name: NF20511_low_3
Description: NF20511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20511_low_3
NF20511_low_3
[»] chr1 (23 HSPs)
chr1 (66-199)||(50231488-50231622)
chr1 (86-199)||(14494751-14494864)
chr1 (272-347)||(50231340-50231415)
chr1 (87-199)||(29699187-29699299)
chr1 (86-199)||(9041180-9041293)
chr1 (94-197)||(49265902-49266005)
chr1 (88-177)||(8528198-8528287)
chr1 (86-161)||(237171-237245)
chr1 (1-40)||(50231647-50231686)
chr1 (273-327)||(43575389-43575443)
chr1 (123-199)||(9046387-9046463)
chr1 (273-327)||(8528029-8528083)
chr1 (273-331)||(14494619-14494677)
chr1 (273-327)||(29699381-29699435)
chr1 (273-322)||(49162453-49162500)
chr1 (273-322)||(4413-4462)
chr1 (272-327)||(48995741-48995794)
chr1 (1-40)||(237294-237333)
chr1 (1-40)||(9046269-9046308)
chr1 (86-137)||(43575211-43575262)
chr1 (272-321)||(8007207-8007254)
chr1 (2-40)||(20132974-20133012)
chr1 (155-199)||(43575262-43575306)
[»] chr4 (23 HSPs)
chr4 (86-199)||(38001407-38001520)
chr4 (86-199)||(54198301-54198413)
chr4 (86-199)||(3729443-3729556)
chr4 (86-197)||(44814470-44814581)
chr4 (87-199)||(9162634-9162746)
chr4 (86-199)||(5524980-5525092)
chr4 (86-151)||(11974720-11974785)
chr4 (110-199)||(12216918-12217007)
chr4 (273-322)||(5524848-5524897)
chr4 (272-327)||(11974871-11974926)
chr4 (2-40)||(38001569-38001607)
chr4 (86-164)||(44673275-44673353)
chr4 (282-326)||(21796054-21796096)
chr4 (272-327)||(11333069-11333122)
chr4 (272-327)||(37144039-37144092)
chr4 (1-40)||(5525142-5525181)
chr4 (273-327)||(12214826-12214878)
chr4 (272-327)||(38001265-38001320)
chr4 (273-327)||(3729306-3729360)
chr4 (273-327)||(9162947-9163001)
chr4 (273-319)||(44814346-44814392)
chr4 (272-327)||(12216663-12216719)
chr4 (1-33)||(44673187-44673219)
[»] chr6 (11 HSPs)
chr6 (66-199)||(10927827-10927960)
chr6 (86-177)||(16316673-16316764)
chr6 (86-199)||(2537016-2537129)
chr6 (86-199)||(27901261-27901374)
chr6 (86-156)||(2438856-2438926)
chr6 (86-199)||(32249943-32250056)
chr6 (105-197)||(23915526-23915618)
chr6 (273-331)||(10927699-10927757)
chr6 (273-327)||(2536879-2536933)
chr6 (86-156)||(3676377-3676447)
chr6 (285-327)||(17590075-17590117)
[»] chr5 (17 HSPs)
chr5 (66-199)||(1190358-1190492)
chr5 (86-199)||(28263826-28263939)
chr5 (273-327)||(1190217-1190271)
chr5 (2-40)||(1190517-1190555)
chr5 (273-327)||(38938797-38938851)
chr5 (272-322)||(38938934-38938984)
chr5 (272-322)||(24007268-24007316)
chr5 (276-322)||(3160993-3161039)
chr5 (127-177)||(38938655-38938705)
chr5 (272-328)||(19514333-19514387)
chr5 (1-40)||(28222130-28222169)
chr5 (1-40)||(38938575-38938614)
chr5 (273-327)||(39850657-39850709)
chr5 (85-131)||(3160808-3160854)
chr5 (273-327)||(28221927-28221981)
chr5 (273-327)||(38939058-38939112)
chr5 (86-151)||(3160861-3160926)
[»] chr7 (21 HSPs)
chr7 (86-199)||(11321281-11321394)
chr7 (69-199)||(9306598-9306729)
chr7 (69-199)||(9302160-9302291)
chr7 (97-198)||(20621269-20621370)
chr7 (94-177)||(35492157-35492240)
chr7 (86-197)||(47220959-47221070)
chr7 (86-151)||(41755439-41755504)
chr7 (272-322)||(9302026-9302076)
chr7 (272-322)||(9306464-9306514)
chr7 (273-327)||(11321475-11321529)
chr7 (87-168)||(47912086-47912167)
chr7 (2-40)||(9302322-9302360)
chr7 (2-40)||(9306760-9306798)
chr7 (86-199)||(9307731-9307842)
chr7 (284-327)||(25801727-25801770)
chr7 (273-327)||(9329609-9329663)
chr7 (2-40)||(9329810-9329848)
chr7 (272-322)||(39675470-39675520)
chr7 (273-327)||(45022655-45022709)
chr7 (86-151)||(9329697-9329762)
chr7 (1-30)||(39677972-39678001)
[»] chr3 (28 HSPs)
chr3 (86-199)||(35369035-35369148)
chr3 (86-199)||(3422633-3422746)
chr3 (86-199)||(22101886-22101999)
chr3 (86-199)||(22176833-22176946)
chr3 (86-197)||(34492032-34492143)
chr3 (86-199)||(7115975-7116088)
chr3 (87-199)||(44822178-44822290)
chr3 (107-194)||(22833257-22833344)
chr3 (96-151)||(35863694-35863749)
chr3 (272-331)||(51139785-51139844)
chr3 (89-168)||(28096278-28096357)
chr3 (86-168)||(53359479-53359561)
chr3 (272-331)||(3424579-3424638)
chr3 (272-319)||(22176407-22176454)
chr3 (1-40)||(26053764-26053803)
chr3 (276-327)||(28096104-28096155)
chr3 (285-327)||(7116183-7116225)
chr3 (94-160)||(7116577-7116643)
chr3 (97-151)||(22101543-22101597)
chr3 (97-151)||(22176488-22176542)
chr3 (2-40)||(22176996-22177034)
chr3 (273-327)||(42897060-42897114)
chr3 (1-40)||(7115886-7115925)
chr3 (272-319)||(22101462-22101509)
chr3 (273-327)||(3422835-3422889)
chr3 (2-40)||(35369197-35369235)
chr3 (136-177)||(51139646-51139687)
chr3 (272-319)||(18461569-18461614)
[»] chr2 (17 HSPs)
chr2 (96-199)||(7061820-7061923)
chr2 (98-199)||(309805-309906)
chr2 (86-199)||(13594472-13594585)
chr2 (86-199)||(35193441-35193554)
chr2 (86-195)||(43528401-43528510)
chr2 (86-199)||(44539532-44539645)
chr2 (87-195)||(27339463-27339563)
chr2 (106-199)||(25047963-25048056)
chr2 (123-199)||(2222037-2222113)
chr2 (273-315)||(2221912-2221954)
chr2 (273-327)||(35193642-35193695)
chr2 (273-327)||(44539722-44539776)
chr2 (273-331)||(44973133-44973191)
chr2 (272-327)||(7061430-7061485)
chr2 (272-327)||(7061697-7061751)
chr2 (1-35)||(35193331-35193365)
chr2 (272-327)||(629370-629423)
[»] scaffold0066 (1 HSPs)
scaffold0066 (86-195)||(56426-56535)
[»] scaffold0025 (1 HSPs)
scaffold0025 (86-199)||(3497-3610)
[»] chr8 (6 HSPs)
chr8 (87-177)||(24432212-24432302)
chr8 (107-194)||(5592720-5592807)
chr8 (272-327)||(32889139-32889194)
chr8 (273-327)||(26527947-26527999)
chr8 (273-321)||(26528045-26528092)
chr8 (273-321)||(32889026-32889074)
[»] scaffold0123 (2 HSPs)
scaffold0123 (273-327)||(17415-17469)
scaffold0123 (88-151)||(17240-17303)
[»] scaffold0031 (1 HSPs)
scaffold0031 (274-321)||(47466-47511)
[»] scaffold0990 (1 HSPs)
scaffold0990 (2-35)||(1083-1116)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 66 - 199
Target Start/End: Complemental strand, 50231622 - 50231488
Alignment:
Q  66 agattgatatgcgggtacgg-ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaag 164  Q
    |||||||||||||| ||||| || |||| |||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||  ||||||| |||    
T  50231622 agattgatatgcggttacggaggaaaaagagggttaacgggaacgattattgacatggattagtaatccacgtgttattttataattggctaacagcaag 50231523  T
Q  165 aacagctcataagtaactatgtgtaagttttctcc 199  Q
    ||||| ||||||| |||| ||||||||||||||||    
T  50231522 aacagttcataagaaactgtgtgtaagttttctcc 50231488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 14494864 - 14494751
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||   |||||| || | ||    
T  14494864 ggtaaaagagggttaacggagacgattagtgacatggattagtaatccacgtgttattttataattgactaacagtaagaacaatccataagaaattgtg 14494765  T
Q  186 tgtaagttttctcc 199  Q
    ||||||||||||||    
T  14494764 tgtaagttttctcc 14494751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 50231415 - 50231340
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatagatattactagtatcattttt 347  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50231415 aaaagaaaatttcaacccaaaggtgtgctgaaaggggtagttttctttatacatagatattactaatatcattttt 50231340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 29699187 - 29699299
Alignment:
Q  87 gtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatgt 186  Q
    |||||| | ||||||||| |||||| | ||||||| |||||||||||||||||||||||||||||  |||||||||||||||  ||||||| || | ||     
T  29699187 gtaaaagatggttaacggggacgatcagtgacatggattagtaatccacgtgttattttataattggctaacagtaagaacaattcataaggaattgtgc 29699286  T
Q  187 gtaagttttctcc 199  Q
    |||||||||||||    
T  29699287 gtaagttttctcc 29699299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 9041293 - 9041180
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| |||||||||||| ||||||| ||||||| ||||| ||| ||||| |||||||||||||  ||||||| |||||||| ||||||| || | |     
T  9041293 ggtaaaagagggttaacggaaacgattaatgacatggattagcaattcacgtattattttataattggctaacagcaagaacagttcataaggaattgta 9041194  T
Q  186 tgtaagttttctcc 199  Q
    ||||||||||||||    
T  9041193 tgtaagttttctcc 9041180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 197
Target Start/End: Complemental strand, 49266005 - 49265902
Alignment:
Q  94 agggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatgtgtaagtt 193  Q
    |||||||||||  || |||| |||||   ||||||||| |||| ||||||||||||||| |||| ||||||||||| ||||||| |||||||| ||||||    
T  49266005 agggttaacgggaacaattagtgacactgattagtaattcacgcgttattttataattagctaatagtaagaacagttcataaggaactatgtataagtt 49265906  T
Q  194 ttct 197  Q
    ||||    
T  49265905 ttct 49265902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 8528287 - 8528198
Alignment:
Q  88 taaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataag 177  Q
    ||||| ||||||||| | |||||| ||||||||| |||||||||||||||||||||||||||||  |||  ||||||||||  |||||||    
T  8528287 taaaagagggttaacagggacgatcattgacatggattagtaatccacgtgttattttataattggctagtagtaagaacaattcataag 8528198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 237245 - 237171
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagt 161  Q
    ||||||| |||||||| ||||||||||| ||||||| ||||||||| |||||||||||||||||||  ||||||||    
T  237245 ggtaaaagagggttaaaggagacgattagtgacatggattagtaat-cacgtgttattttataattggctaacagt 237171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 50231686 - 50231647
Alignment:
Q  1 gatgtacaacataaaagcggctgataaaaaagtaatatga 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  50231686 gatgtacaacataaaagcggctgataaaaaagtaatatga 50231647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 43575389 - 43575443
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    ||||||||||||||||||||| |||| ||||||||||| ||||||||||| ||||    
T  43575389 aaagaaaatttcaacccaaaagtgtgttgaaaggggtaattttctttatatatag 43575443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 9046387 - 9046463
Alignment:
Q  123 attagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatgtgtaagttttctcc 199  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||  ||  ||| |||| |||||| |||||||||    
T  9046387 attagtaatccacgtgttattttataattggctaacaataagaacaattcgcaaggaactgtgtgtacgttttctcc 9046463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 8528083 - 8528029
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||| ||| ||||    
T  8528083 aaagaaaattctaacccaaaaatgtgccgaaaggggtagttttcttgatatatag 8528029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 331
Target Start/End: Complemental strand, 14494677 - 14494619
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatagatat 331  Q
    |||||||| | |||||||||| ||||||||||||| |||||||||||||| ||| ||||    
T  14494677 aaagaaaagtccaacccaaaagtgtgctgaaagggttagttttctttatatatatatat 14494619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 29699381 - 29699435
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    |||||||||| |||||||||| |||| ||||| ||||||||||||||||| ||||    
T  29699381 aaagaaaattccaacccaaaagtgtgttgaaaagggtagttttctttatatatag 29699435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 49162500 - 49162453
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttata 322  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||||||    
T  49162500 aaagaaaaattcaacccaaaa--gtgctgaaaggggtagttttctttata 49162453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 4413 - 4462
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttata 322  Q
    |||||||| | |||||||||| | ||||||||||||||||||||||||||    
T  4413 aaagaaaagtccaacccaaaagtatgctgaaaggggtagttttctttata 4462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 48995741 - 48995794
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    ||||||||| ||||||||||||||||  ||||||| ||||||||||||||| ||||    
T  48995741 aaaagaaaaattcaacccaaaaatgt--tgaaaggagtagttttctttatatatag 48995794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 237333 - 237294
Alignment:
Q  1 gatgtacaacataaaagcggctgataaaaaagtaatatga 40  Q
    |||||||||||||||| ||||| |||||||||||||||||    
T  237333 gatgtacaacataaaatcggcttataaaaaagtaatatga 237294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 9046269 - 9046308
Alignment:
Q  1 gatgtacaacataaaagcggctgataaaaaagtaatatga 40  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  9046269 gatgtacaacataaaagcggctgatagaaaagtaacatga 9046308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 43575211 - 43575262
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgt 137  Q
    ||||||| |||||||| || |||||||| ||||||| |||||||||||||||    
T  43575211 ggtaaaagagggttaatggggacgattactgacatggattagtaatccacgt 43575262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 8007254 - 8007207
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttat 321  Q
    ||||||||| ||||||||||||  |||||||||||| |||||||||||||    
T  8007254 aaaagaaaaattcaacccaaaa--gtgctgaaagggatagttttctttat 8007207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 20132974 - 20133012
Alignment:
Q  2 atgtacaacataaaagcggctgataaaaaagtaatatga 40  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  20132974 atgtacaacataaaatcggctgataaaaaagtaacatga 20133012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 43575262 - 43575306
Alignment:
Q  155 taacagtaagaacagctcataagtaactatgtgtaagttttctcc 199  Q
    ||||||| |||| || ||||||| |||||||||||||||||||||    
T  43575262 taacagttagaaaagttcataaggaactatgtgtaagttttctcc 43575306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 38001520 - 38001407
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||||||||||||||| || ||||| ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| || | ||    
T  38001520 ggtaaaatagggttaacggggatgattagtgacatggattagtaatccatgtgttattttataattgactaacagtaagaacagttcataaggaattgtg 38001421  T
Q  186 tgtaagttttctcc 199  Q
     |||||||||||||    
T  38001420 cgtaagttttctcc 38001407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 54198301 - 54198413
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| ||||||||||| || ||||| ||||||| |||||||||||||||||||||||||||||  |||||| ||||||||  ||||||| |||| ||    
T  54198301 ggtaaaagagggttaacgg-gatgattagtgacatggattagtaatccacgtgttattttataattggctaacattaagaacatttcataagaaactgtg 54198399  T
Q  186 tgtaagttttctcc 199  Q
    ||||||||||||||    
T  54198400 tgtaagttttctcc 54198413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 3729556 - 3729443
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| |||||||||   |||||||| ||||||| ||||||||||||| ||||||||||||||| ||| | ||||||||||| ||||||| || | ||    
T  3729556 ggtaaaagagggttaacatggacgattagtgacatgtattagtaatccacatgttattttataattgacttagagtaagaacagttcataaggaattgtg 3729457  T
Q  186 tgtaagttttctcc 199  Q
    |||| |||||||||    
T  3729456 tgtatgttttctcc 3729443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 86 - 197
Target Start/End: Complemental strand, 44814581 - 44814470
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| ||||||||||| ||| |||| ||||||  |||||||||| ||||||||||||||||||  |||||||||||||||| ||||||  || | ||    
T  44814581 ggtaaaagagggttaacggggacaattagtgacatagattagtaatctacgtgttattttataattggctaacagtaagaacagttcataaagaattgtg 44814482  T
Q  186 tgtaagttttct 197  Q
    || |||||||||    
T  44814481 tggaagttttct 44814470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 9162634 - 9162746
Alignment:
Q  87 gtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatgt 186  Q
    |||||| ||||||||||  || ||||| ||||||| |||| ||||||||||||||||||||||||  | |||||||||||||  ||||||| || | ||     
T  9162634 gtaaaagagggttaacgtggaagattaatgacatggattattaatccacgtgttattttataattggcaaacagtaagaacaattcataaggaattgtgc 9162733  T
Q  187 gtaagttttctcc 199  Q
    |||||||||||||    
T  9162734 gtaagttttctcc 9162746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 5525092 - 5524980
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataatt-aactaacagtaagaacagctcataagtaactat 184  Q
    ||||||| || |||||||| |||||  | ||||||| |||||||||| || |||||||||||||||    ||||||||||||||||||||||| || | |    
T  5525092 ggtaaaagagagttaacggggacga--agtgacatggattagtaatctacttgttattttataattgggttaacagtaagaacagctcataaggaattgt 5524995  T
Q  185 gtgtaagttttctcc 199  Q
    |||||||||||||||    
T  5524994 gtgtaagttttctcc 5524980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 11974720 - 11974785
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataatt 151  Q
    ||||||| || ||||||||||||||||| || ||||||||| ||||||| ||||||||||||||||    
T  11974720 ggtaaaagagagttaacggagacgattagtggcatgaattactaatccatgtgttattttataatt 11974785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 12217007 - 12216918
Alignment:
Q  110 attattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatgtgtaagttttctcc 199  Q
    |||| ||||||| ||||||||||||| |||||||||||||||  ||| || ||||||||| || |||| || | ||||||||||||||||    
T  12217007 attactgacatggattagtaatccacatgttattttataattggctatcaataagaacagatcttaaggaattgtgtgtaagttttctcc 12216918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 5524897 - 5524848
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttata 322  Q
    |||||||| | |||||||||| ||||||||||||||||||||||||||||    
T  5524897 aaagaaaagtacaacccaaaagtgtgctgaaaggggtagttttctttata 5524848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 11974871 - 11974926
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    ||||||||| |||||||||||  | |||||||||||||||||||||||||| ||||    
T  11974871 aaaagaaaagttcaacccaaatgtatgctgaaaggggtagttttctttatatatag 11974926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 38001607 - 38001569
Alignment:
Q  2 atgtacaacataaaagcggctgataaaaaagtaatatga 40  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  38001607 atgtacaacattaaagcggctgataaaaaagtaatatga 38001569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 164
Target Start/End: Original strand, 44673275 - 44673353
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaag 164  Q
    ||||||| |||||||||||  || |||| |||| |||||||||||| |||||||||| ||||||||  || ||||||||    
T  44673275 ggtaaaagagggttaacgggaacaattagtgacgtgaattagtaattcacgtgttatcttataattggcttacagtaag 44673353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 21796096 - 21796054
Alignment:
Q  282 ttcaacccaaaaatgtgctgaaaggggtagttttctttatacata 326  Q
    |||||||||||||||  ||||||||||||||||||||||||||||    
T  21796096 ttcaacccaaaaatg--ctgaaaggggtagttttctttatacata 21796054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 11333122 - 11333069
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    ||||||||| |||| |||||||  ||||||||||||||||||||||||||| ||||    
T  11333122 aaaagaaaagttcagcccaaaa--gtgctgaaaggggtagttttctttatatatag 11333069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 37144039 - 37144092
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    ||||||||| | ||||||||||  ||||||||||||||||||||||||||| ||||    
T  37144039 aaaagaaaaatccaacccaaaa--gtgctgaaaggggtagttttctttatatatag 37144092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5525181 - 5525142
Alignment:
Q  1 gatgtacaacataaaagcggctgataaaaaagtaatatga 40  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  5525181 gatgtacaacataaaatcggctgataaaaaagtaacatga 5525142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 12214826 - 12214878
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    |||||||| |||| ||||||| |||  ||||||||||||||||||||||||||||    
T  12214826 aaagaaaaattcagcccaaaagtgt--tgaaaggggtagttttctttatacatag 12214878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 38001320 - 38001265
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    ||||||||||| |||||||||| |||| ||||||||  ||||||||||||| ||||    
T  38001320 aaaagaaaattccaacccaaaagtgtgttgaaagggacagttttctttatatatag 38001265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 3729360 - 3729306
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    |||||||||| |||||||||| |||| ||||| || |||||||||||||| ||||    
T  3729360 aaagaaaattccaacccaaaagtgtgttgaaatggatagttttctttatatatag 3729306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 9162947 - 9163001
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    |||||||| | ||||| |||| ||||||||| |||||||||||||||||| ||||    
T  9162947 aaagaaaagtccaaccgaaaagtgtgctgaacggggtagttttctttatatatag 9163001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 44814392 - 44814346
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttcttt 319  Q
    |||||||| ||| |||||||| |||||||||| ||||||||||||||    
T  44814392 aaagaaaagttctacccaaaagtgtgctgaaaagggtagttttcttt 44814346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 12216719 - 12216663
Alignment:
Q  272 aaaagaaaatttcaacccaaaaa-tgtgctgaaaggggtagttttctttatacatag 327  Q
    ||||||||||| ||||| ||||| ||||||||||||| ||||| | |||||||||||    
T  12216719 aaaagaaaattccaacctaaaaagtgtgctgaaagggatagttatttttatacatag 12216663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44673187 - 44673219
Alignment:
Q  1 gatgtacaacataaaagcggctgataaaaaagt 33  Q
    |||||||||||||||||||| ||||||||||||    
T  44673187 gatgtacaacataaaagcggttgataaaaaagt 44673219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 199
Target Start/End: Complemental strand, 10927960 - 10927827
Alignment:
Q  66 agattgatatgcgggtacgg-ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaag 164  Q
    ||||||||||| || ||||| ||||||| ||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||    
T  10927960 agattgatatgtggttacggaggtaaaagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattggctaacagtaag 10927861  T
Q  165 aacagctcataagtaactatgtgtaagttttctcc 199  Q
    ||||  | ||||| |||| ||||||| ||||||||    
T  10927860 aacaatttataaggaactgtgtgtaa-ttttctcc 10927827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 86 - 177
Target Start/End: Original strand, 16316673 - 16316764
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataag 177  Q
    ||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||  |||||||    
T  16316673 ggtaaaagagggttaacggagacgattagtgacatggattagtaatccacgtgttattttataattagctaacattaagaacaattcataag 16316764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 2537129 - 2537016
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||| ||||||||||||||||||||  |||| ||||||||||  ||||||| || | ||    
T  2537129 ggtaaaatagggttaacggggacgattagtgacatggattagtaacccacgtgttattttataattggctaaaagtaagaacaattcataaggaattgtg 2537030  T
Q  186 tgtaagttttctcc 199  Q
      ||||||||||||    
T  2537029 cttaagttttctcc 2537016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 27901261 - 27901374
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| ||||||||||| |||||| | | ||||| |||||||||||| ||||||||||||||||  |||   |||||||||| ||||||| |||| ||    
T  27901261 ggtaaaagagggttaacggggacgatcagtaacatggattagtaatccatgtgttattttataattggctagtcgtaagaacagttcataaggaactgtg 27901360  T
Q  186 tgtaagttttctcc 199  Q
    ||||||||||||||    
T  27901361 tgtaagttttctcc 27901374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 2438856 - 2438926
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaacta 156  Q
    ||||||| ||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| ||||    
T  2438856 ggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattgacta 2438926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 32249943 - 32250056
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| | ||||||| |||||||||| ||||||| |||||||||| ||||||||||||||||||   ||||||||||||||  | ||||| || | ||    
T  32249943 ggtaaaagatggttaacagagacgattagtgacatggattagtaatctacgtgttattttataattggttaacagtaagaacaatttataaggaattgtg 32250042  T
Q  186 tgtaagttttctcc 199  Q
     |||||||||||||    
T  32250043 ggtaagttttctcc 32250056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 23915526 - 23915618
Alignment:
Q  105 agacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatgtgtaagttttct 197  Q
    ||||||||| ||||||  |||||||||||||||||||||||||||||  |||||| ||||||||| ||||||  || | ||||||||||||||    
T  23915526 agacgattagtgacatagattagtaatccacgtgttattttataattggctaacaataagaacagttcataaagaattgtgtgtaagttttct 23915618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 273 - 331
Target Start/End: Complemental strand, 10927757 - 10927699
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatagatat 331  Q
    ||||||||||||||| ||||| |||||||||||||||| ||||||||||| ||| ||||    
T  10927757 aaagaaaatttcaactcaaaagtgtgctgaaaggggtaattttctttatatatatatat 10927699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 2536933 - 2536879
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    |||||||| | |||||||||| ||||||||||| |||||||||||||||| ||||    
T  2536933 aaagaaaagtccaacccaaaagtgtgctgaaagaggtagttttctttatatatag 2536879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 3676447 - 3676377
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaacta 156  Q
    ||||||| ||||||||| | |||||||| ||| ||| |||| |||||||||||||||| ||||||| ||||    
T  3676447 ggtaaaagagggttaacagggacgattagtgatatggattactaatccacgtgttattgtataattgacta 3676377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 327
Target Start/End: Original strand, 17590075 - 17590117
Alignment:
Q  285 aacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    ||||||||||||||||||||| |||||||||||||||| ||||    
T  17590075 aacccaaaaatgtgctgaaagaggtagttttctttatatatag 17590117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 199
Target Start/End: Complemental strand, 1190492 - 1190358
Alignment:
Q  66 agattgatatgcgggtacgg-ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaag 164  Q
    |||||||||||  | ||||| ||||||| ||||||||||| ||||||| |||||||| ||||||||| || ||||||||||||||||  |||||||||||    
T  1190492 agattgatatgtagttacggaggtaaaagagggttaacggggacgattgttgacatggattagtaattcatgtgttattttataattggctaacagtaag 1190393  T
Q  165 aacagctcataagtaactatgtgtaagttttctcc 199  Q
    ||||  ||||||| |||| ||||||||||||||||    
T  1190392 aacaattcataaggaactgtgtgtaagttttctcc 1190358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 28263826 - 28263939
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| || |||||||| |||||||| |||||||||||||||||||||||||||||||||||||  |||||| |||||| || ||||||| || | ||    
T  28263826 ggtaaaagagagttaacggggacgattagtgacatgaattagtaatccacgtgttattttataattggctaacactaagaatagttcataaggaattgtg 28263925  T
Q  186 tgtaagttttctcc 199  Q
     |||||||||||||    
T  28263926 cgtaagttttctcc 28263939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 1190271 - 1190217
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    |||||||||| |||||||||| |||||| ||||||||||||||||||||||||||    
T  1190271 aaagaaaattccaacccaaaagtgtgctaaaaggggtagttttctttatacatag 1190217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 1190555 - 1190517
Alignment:
Q  2 atgtacaacataaaagcggctgataaaaaagtaatatga 40  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1190555 atgtacaacataaaagcggctgataaaaaagtaatatga 1190517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 38938797 - 38938851
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    |||||||| | |||||||||| |||||||||||||||||||||||||||| ||||    
T  38938797 aaagaaaagtccaacccaaaagtgtgctgaaaggggtagttttctttatatatag 38938851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 38938934 - 38938984
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttata 322  Q
    ||||||||| | |||||||||| ||||||||||||||||||||||||||||    
T  38938934 aaaagaaaagtccaacccaaaagtgtgctgaaaggggtagttttctttata 38938984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 24007316 - 24007268
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttata 322  Q
    ||||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  24007316 aaaagaaaaattcaacccaaaaatg--ctgaaaggggtagttttctttata 24007268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 322
Target Start/End: Original strand, 3160993 - 3161039
Alignment:
Q  276 gaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttata 322  Q
    ||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  3160993 gaaaagttcaacccaaaagtgtgctggaaggggtagttttctttata 3161039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 38938655 - 38938705
Alignment:
Q  127 gtaatccacgtgttattttataattaactaacagtaagaacagctcataag 177  Q
    ||||||||| |||||||||||||||  |||||||||||||||| |||||||    
T  38938655 gtaatccacatgttattttataattggctaacagtaagaacagttcataag 38938705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 328
Target Start/End: Original strand, 19514333 - 19514387
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacataga 328  Q
    ||||||||| |||||||||||||||  |||||||| ||||||||||||||| |||||    
T  19514333 aaaagaaaaattcaacccaaaaatg--ctgaaaggagtagttttctttatatataga 19514387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28222169 - 28222130
Alignment:
Q  1 gatgtacaacataaaagcggctgataaaaaagtaatatga 40  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  28222169 gatgtacaacattaaagcggctgataaaaaagtaacatga 28222130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 38938575 - 38938614
Alignment:
Q  1 gatgtacaacataaaagcggctgataaaaaagtaatatga 40  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  38938575 gatgtacaacataaaaccggctgataaaaaagtaacatga 38938614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 39850709 - 39850657
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    |||||||| | ||||||||||||||  ||||||||||||||||||||||| ||||    
T  39850709 aaagaaaagtccaacccaaaaatgt--tgaaaggggtagttttctttatatatag 39850657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 3160808 - 3160854
Alignment:
Q  85 gggtaaaatagggttaacggagacgattattgacatgaattagtaat 131  Q
    |||||||| |||||||||||||| ||||| |||||||||||| ||||    
T  3160808 gggtaaaagagggttaacggagatgattagtgacatgaattattaat 3160854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 28221981 - 28221927
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    |||||||| | |||||||||| ||||||||||| | |||||||||||||| ||||    
T  28221981 aaagaaaagtccaacccaaaagtgtgctgaaagagatagttttctttatatatag 28221927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 38939058 - 38939112
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    |||||||| | ||| |||||| |||| ||||||||||||||||||||||| ||||    
T  38939058 aaagaaaagtccaatccaaaagtgtgttgaaaggggtagttttctttatatatag 38939112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 3160861 - 3160926
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataatt 151  Q
    ||||||| |||||||||||||  ||||| ||| ||| |||| |||| ||| |||||||||||||||    
T  3160861 ggtaaaagagggttaacggagctgattagtgatatggattactaattcacatgttattttataatt 3160926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 11321281 - 11321394
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| |||||||| || |||||||| ||||||||||||||||| || ||||||||||||||||  |||||||||||||||| | ||||| |||| ||    
T  11321281 ggtaaaagagggttaatggggacgattagtgacatgaattagtaattcatgtgttattttataattggctaacagtaagaacagttaataagaaactgtg 11321380  T
Q  186 tgtaagttttctcc 199  Q
    ||||||||||||||    
T  11321381 tgtaagttttctcc 11321394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 9306729 - 9306598
Alignment:
Q  69 ttgatatgcgggtacgg-ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaac 167  Q
    |||||||| || ||||| ||||||| |||||||||   |||||||| | ||||| |||| ||||||||| |||||||||||| || ||||||||||||||    
T  9306729 ttgatatgtggttacggtggtaaaagagggttaacaatgacgattagttacatggattattaatccacgagttattttataactagctaacagtaagaac 9306630  T
Q  168 agctcataagtaactatgtgtaagttttctcc 199  Q
    || ||||||| |||||||||||||||||||||    
T  9306629 agttcataaggaactatgtgtaagttttctcc 9306598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 9302291 - 9302160
Alignment:
Q  69 ttgatatgcgggtacgg-ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaac 167  Q
    |||||||| || ||||| ||||||| |||||||||   |||||||| | ||||| |||| ||||||||| |||||||||||| || ||||| ||||||||    
T  9302291 ttgatatgtggttacggtggtaaaagagggttaacaatgacgattagttacatggattattaatccacgagttattttataactagctaactgtaagaac 9302192  T
Q  168 agctcataagtaactatgtgtaagttttctcc 199  Q
    || ||||||| |||||||||||||||||||||    
T  9302191 agttcataaggaactatgtgtaagttttctcc 9302160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 198
Target Start/End: Original strand, 20621269 - 20621370
Alignment:
Q  97 gttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatgtgtaagttttc 196  Q
    |||||||| |||||||| ||||||| |||||||||| || |||||||||||||||  |||| ||||||||||  ||||||| || | |||||||||||||    
T  20621269 gttaacggggacgattagtgacatggattagtaatctacttgttattttataattgcctaatagtaagaacaattcataaggaattgtgtgtaagttttc 20621368  T
Q  197 tc 198  Q
    ||    
T  20621369 tc 20621370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 35492240 - 35492157
Alignment:
Q  94 agggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataag 177  Q
    ||||||||||  || ||||| ||||||||||||||||||||| |||||||||||||||  |||| ||||||||||| |||||||    
T  35492240 agggttaacgaggatgattagtgacatgaattagtaatccacatgttattttataattggctaatagtaagaacagttcataag 35492157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 197
Target Start/End: Complemental strand, 47221070 - 47220959
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| ||||||| | | ||| |||| ||||||||||||||||| ||||||||||||||||| |  |||||||||||||||  ||||||| || | ||    
T  47221070 ggtaaaagagggttagctgggacaattagtgacatgaattagtaattcacgtgttattttataactggctaacagtaagaacaattcataaggaattgtg 47220971  T
Q  186 tgtaagttttct 197  Q
    ||| ||||||||    
T  47220970 tgtgagttttct 47220959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 41755439 - 41755504
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataatt 151  Q
    ||||||| ||||||||||| |||||||  ||||||||||||||||||||| |||||||||| ||||    
T  41755439 ggtaaaagagggttaacggggacgattggtgacatgaattagtaatccacatgttattttacaatt 41755504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 9302076 - 9302026
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttata 322  Q
    ||||||||| | |||||||||| ||||||||||||||||||||||||||||    
T  9302076 aaaagaaaagtccaacccaaaagtgtgctgaaaggggtagttttctttata 9302026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 9306514 - 9306464
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttata 322  Q
    ||||||||| | |||||||||| ||||||||||||||||||||||||||||    
T  9306514 aaaagaaaagtccaacccaaaagtgtgctgaaaggggtagttttctttata 9306464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 11321475 - 11321529
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    |||||||| | |||||||||| |||||||||||||||||||||||||||| ||||    
T  11321475 aaagaaaagtccaacccaaaagtgtgctgaaaggggtagttttctttatatatag 11321529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 47912167 - 47912086
Alignment:
Q  87 gtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaaca 168  Q
    |||||||||||||||| ||||| |||| |||| || ||||||||||||| ||||||||| |||||  || ||| ||||||||    
T  47912167 gtaaaatagggttaacagagacaattagtgacttggattagtaatccacatgttattttttaattggctgacaataagaaca 47912086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 9302360 - 9302322
Alignment:
Q  2 atgtacaacataaaagcggctgataaaaaagtaatatga 40  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  9302360 atgtacaacataaaagcggctgataaaaaagtaacatga 9302322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 9306798 - 9306760
Alignment:
Q  2 atgtacaacataaaagcggctgataaaaaagtaatatga 40  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  9306798 atgtacaacataaaagcggctgataaaaaagtaacatga 9306760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 9307731 - 9307842
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| ||||||||||| ||||| || ||||||| ||||||||| |||||| ||||||| ||||  |||||| |||||| || ||||||| || | ||    
T  9307731 ggtaaaagagggttaacggggacga-tagtgacatggattagtaatgcacgtgctatttta-aattggctaacaataagaatagttcataaggaattgtg 9307828  T
Q  186 tgtaagttttctcc 199  Q
    | ||| ||||||||    
T  9307829 tataaattttctcc 9307842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 327
Target Start/End: Original strand, 25801727 - 25801770
Alignment:
Q  284 caacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    |||| ||||| |||||||||||||||||||||||||||| ||||    
T  25801727 caacgcaaaagtgtgctgaaaggggtagttttctttatatatag 25801770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 9329663 - 9329609
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    |||||||| | |||||||||| |||| ||||| ||||||||||||||||| ||||    
T  9329663 aaagaaaaatccaacccaaaagtgtgttgaaaagggtagttttctttatatatag 9329609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 9329848 - 9329810
Alignment:
Q  2 atgtacaacataaaagcggctgataaaaaagtaatatga 40  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  9329848 atgtacaacataaaaacggctgataaaaaagtaacatga 9329810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 39675520 - 39675470
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttata 322  Q
    ||||||||| ||||||| |||||||||||||||| | |||||| |||||||    
T  39675520 aaaagaaaaattcaacctaaaaatgtgctgaaagagatagtttcctttata 39675470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 45022655 - 45022709
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    |||||||| ||||| || ||| ||||||||||||| |||||||||||||| ||||    
T  45022655 aaagaaaagttcaatcctaaagtgtgctgaaagggatagttttctttatatatag 45022709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 9329762 - 9329697
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataatt 151  Q
    ||||||| |||  |||| |||| ||||| ||||||| |||| |||||||| |||||||||||||||    
T  9329762 ggtaaaagaggtctaacagagatgattaatgacatggattactaatccacatgttattttataatt 9329697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 39678001 - 39677972
Alignment:
Q  1 gatgtacaacataaaagcggctgataaaaa 30  Q
    ||||||||||||||||||||||||||||||    
T  39678001 gatgtacaacataaaagcggctgataaaaa 39677972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 35369148 - 35369035
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| | |||||| || |||||||| ||||||| |||||||||||| ||||||||||||||||  |||||||||||||||| ||||||| |||| ||    
T  35369148 ggtaaaagatggttaatggggacgattagtgacatggattagtaatccatgtgttattttataattggctaacagtaagaacagttcataaggaactgtg 35369049  T
Q  186 tgtaagttttctcc 199  Q
    ||||||||||||||    
T  35369048 tgtaagttttctcc 35369035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 3422633 - 3422746
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| |||| ||||||  |||||||  |||||| |||| |||||||| ||||| ||||||||| ||||||||||||||||| ||||||| |||||||    
T  3422633 ggtaaaagagggataacgggtacgattaaagacatggattaataatccacatgttactttataattgactaacagtaagaacagttcataaggaactatg 3422732  T
Q  186 tgtaagttttctcc 199  Q
    ||||||||||||||    
T  3422733 tgtaagttttctcc 3422746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 22101999 - 22101886
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| |||||||| || |||||||| ||||||| |||||||||||| |||||||||||||||   |||||||||||||||| ||||||| |||  ||    
T  22101999 ggtaaaagagggttaatggggacgattagtgacatggattagtaatccatgtgttattttataataggctaacagtaagaacagttcataagaaaccgtg 22101900  T
Q  186 tgtaagttttctcc 199  Q
    ||||||||||||||    
T  22101899 tgtaagttttctcc 22101886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 22176946 - 22176833
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| |||||||| || |||||||| ||||||| |||||||||||| |||||||||||||||   |||||||||||||||| ||||||  |||| ||    
T  22176946 ggtaaaaaagggttaatggggacgattagtgacatggattagtaatccatgtgttattttataataggctaacagtaagaacagttcataaaaaactgtg 22176847  T
Q  186 tgtaagttttctcc 199  Q
    ||||||||||||||    
T  22176846 tgtaagttttctcc 22176833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 86 - 197
Target Start/End: Complemental strand, 34492143 - 34492032
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| || ||||||||| || |||| ||||||| ||||||||| |||||||||||||||||||| | |||||||||||||| || |||  |||||||    
T  34492143 ggtaaaagagagttaacggaaactattagtgacatggattagtaattcacgtgttattttataattagccaacagtaagaacagttcttaaagaactatg 34492044  T
Q  186 tgtaagttttct 197  Q
    | ||||||||||    
T  34492043 tataagttttct 34492032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 7115975 - 7116088
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| ||| ||||||| ||| |||| | ||||| | ||||||| |||||||||||||||||||  |||||||||||||||| ||||||| || | ||    
T  7115975 ggtaaaagaggattaacggggacaattagtaacatggactagtaatacacgtgttattttataatttgctaacagtaagaacagttcataaggaattgtg 7116074  T
Q  186 tgtaagttttctcc 199  Q
    ||||||||||||||    
T  7116075 tgtaagttttctcc 7116088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 199
Target Start/End: Complemental strand, 44822290 - 44822178
Alignment:
Q  87 gtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatgt 186  Q
    |||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||  |||||| ||||||||  ||||||  |  | |||    
T  44822290 gtaaaagagggttaacggggacgattagtgacatgaattagtaatccatgtgttgttttataattggctaacaataagaacaattcataaagagttgtgt 44822191  T
Q  187 gtaagttttctcc 199  Q
    |||||||||||||    
T  44822190 gtaagttttctcc 44822178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 22833344 - 22833257
Alignment:
Q  107 acgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatgtgtaagttt 194  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||| |||  | |||||||||    
T  22833344 acgattagtgacatggattagtaatccacgtgttattttataattgactaacagtaagaatagttcataaggaaccgtatgtaagttt 22833257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 35863694 - 35863749
Alignment:
Q  96 ggttaacggagacgattattgacatgaattagtaatccacgtgttattttataatt 151  Q
    ||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||    
T  35863694 ggttaacggggacgattagtgacatggattagtaatccacgtgttattttataatt 35863749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 331
Target Start/End: Original strand, 51139785 - 51139844
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatagatat 331  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||| ||| ||||    
T  51139785 aaaagaaaagttcaacccaaaagtgtgctgaaaggggtagttttctttatatatatatat 51139844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 28096357 - 28096278
Alignment:
Q  89 aaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaaca 168  Q
    |||| ||||||||||  |||||||| ||||||| |||||||||| || |||||||||||||||  |||||| ||||||||    
T  28096357 aaaagagggttaacgaggacgattagtgacatggattagtaatcaacatgttattttataattggctaacactaagaaca 28096278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 168
Target Start/End: Complemental strand, 53359561 - 53359479
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaaca 168  Q
    ||||||| ||||||||||| || ||||| |||||||||||| |||| |||||| ||||||||||||  | ||| |||||||||    
T  53359561 ggtaaaagagggttaacggggatgattagtgacatgaattaataattcacgtgctattttataattggccaactgtaagaaca 53359479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 331
Target Start/End: Original strand, 3424579 - 3424638
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatagatat 331  Q
    ||||||||| | |||||||||| |||||| ||||||||||||||||| ||| ||||||||    
T  3424579 aaaagaaaagtccaacccaaaagtgtgctaaaaggggtagttttcttcatatatagatat 3424638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 319
Target Start/End: Complemental strand, 22176454 - 22176407
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttcttt 319  Q
    ||||||||| |||||||||||| | |||||||||||||||||||||||    
T  22176454 aaaagaaaagttcaacccaaaagtctgctgaaaggggtagttttcttt 22176407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26053803 - 26053764
Alignment:
Q  1 gatgtacaacataaaagcggctgataaaaaagtaatatga 40  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  26053803 gatgtacaacataaaagcggctgataaaaaagtaacatga 26053764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 28096155 - 28096104
Alignment:
Q  276 gaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    ||||| |||||||||||| ||||||||||||| |||||||||||||| ||||    
T  28096155 gaaaagttcaacccaaaagtgtgctgaaagggatagttttctttatatatag 28096104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 327
Target Start/End: Original strand, 7116183 - 7116225
Alignment:
Q  285 aacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    ||||||||| |||||||||||||||||||||||||||| ||||    
T  7116183 aacccaaaagtgtgctgaaaggggtagttttctttatatatag 7116225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 7116577 - 7116643
Alignment:
Q  94 agggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacag 160  Q
    ||||||||| | ||| |||| |||||||||| | |||| ||||||||||||||||||| ||||||||    
T  7116577 agggttaaccgggacaattagtgacatgaatcattaattcacgtgttattttataattgactaacag 7116643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 22101597 - 22101543
Alignment:
Q  97 gttaacggagacgattattgacatgaattagtaatccacgtgttattttataatt 151  Q
    |||||||  |||||||| ||||||| |||| ||||||||||||||||||||||||    
T  22101597 gttaacgttgacgattagtgacatggattactaatccacgtgttattttataatt 22101543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 22176542 - 22176488
Alignment:
Q  97 gttaacggagacgattattgacatgaattagtaatccacgtgttattttataatt 151  Q
    |||||||  |||||||| ||||||| |||| ||||||||||||||||||||||||    
T  22176542 gttaacgtggacgattagtgacatggattactaatccacgtgttattttataatt 22176488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 22177034 - 22176996
Alignment:
Q  2 atgtacaacataaaagcggctgataaaaaagtaatatga 40  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  22177034 atgtacaacataaaagcggctgataaaaaagtaacatga 22176996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 42897060 - 42897114
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    |||||||| | |||| ||||| |||||||||||||||||||||||||||| ||||    
T  42897060 aaagaaaaatccaacacaaaagtgtgctgaaaggggtagttttctttatatatag 42897114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7115886 - 7115925
Alignment:
Q  1 gatgtacaacataaaagcggctgataaaaaagtaatatga 40  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  7115886 gatgtacaacataaaatcggctgataaaaaagtaacatga 7115925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 319
Target Start/End: Complemental strand, 22101509 - 22101462
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttcttt 319  Q
    ||||||||| |||||||||||| | ||||||||||| |||||||||||    
T  22101509 aaaagaaaagttcaacccaaaagtctgctgaaagggctagttttcttt 22101462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 3422835 - 3422889
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    |||||||| | |||||||||| |||||||||||||  ||||||||||||| ||||    
T  3422835 aaagaaaagtccaacccaaaagtgtgctgaaagggacagttttctttatatatag 3422889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 35369235 - 35369197
Alignment:
Q  2 atgtacaacataaaagcggctgataaaaaagtaatatga 40  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  35369235 atgtacaacataaaaacggctgataaaaaagtaacatga 35369197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 51139646 - 51139687
Alignment:
Q  136 gtgttattttataattaactaacagtaagaacagctcataag 177  Q
    ||||||||||||||||  |||||||||||||||| |||||||    
T  51139646 gtgttattttataattggctaacagtaagaacagttcataag 51139687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 319
Target Start/End: Original strand, 18461569 - 18461614
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttcttt 319  Q
    ||||||||| ||||||||||||  |||||||||| |||||||||||||    
T  18461569 aaaagaaaaattcaacccaaaa--gtgctgaaagaggtagttttcttt 18461614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 7061923 - 7061820
Alignment:
Q  96 ggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatgtgtaagtttt 195  Q
    ||||||||  |||||||| ||| |||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| || | ||||||||||||    
T  7061923 ggttaacgaggacgattagtgatatgaattagtaatccatgtgttattttataattgactaacagtaagaacagttcataagaaattgtgtgtaagtttt 7061824  T
Q  196 ctcc 199  Q
    ||||    
T  7061823 ctcc 7061820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 98 - 199
Target Start/End: Complemental strand, 309906 - 309805
Alignment:
Q  98 ttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatgtgtaagttttct 197  Q
    ||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||  |||||||||||||||| ||||||| || | ||||||||||||||    
T  309906 ttaacggggacgattagtgacatggattagtaatccacatgttattttataattggctaacagtaagaacagttcataaggaattctgtgtaagttttct 309807  T
Q  198 cc 199  Q
    ||    
T  309806 cc 309805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 13594585 - 13594472
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| |||||||| ||||||||||| | ||||| ||||||||||||| |||||||||||||||| |||||||||||||||  ||||||| || |  |    
T  13594585 ggtaaaagagggttaatggagacgattagttacatggattagtaatccacatgttattttataattagctaacagtaagaacaattcataaggaattgcg 13594486  T
Q  186 tgtaagttttctcc 199  Q
    ||||||||||||||    
T  13594485 tgtaagttttctcc 13594472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 35193441 - 35193554
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| ||||||||||| |||||||| ||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||  ||||||  || | ||    
T  35193441 ggtaaaagagggttaacggggacgattagtgacatggattagtaatccacatgttattttataattgactaacagtaagaacaattcataaagaattgtg 35193540  T
Q  186 tgtaagttttctcc 199  Q
    |||| |||||||||    
T  35193541 tgtaggttttctcc 35193554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 195
Target Start/End: Complemental strand, 43528510 - 43528401
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| |||||||||||||||||||| ||||||| ||||||||| ||| ||||||||||||||| | | ||| ||| ||||| ||||| | || | ||    
T  43528510 ggtaaaagagggttaacggagacgattagtgacatggattagtaattcacatgttattttataattgattgacaataaaaacagttcatagggaattgtg 43528411  T
Q  186 tgtaagtttt 195  Q
    ||||||||||    
T  43528410 tgtaagtttt 43528401  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 44539532 - 44539645
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| | ||||||| | ||| |||| |||||||||||||||||||||||||||||||||||||  |||| ||||||||||  ||||||| || | ||    
T  44539532 ggtaaaagaaggttaactgtgacaattaatgacatgaattagtaatccacgtgttattttataattggctaatagtaagaacaattcataaggaattgtg 44539631  T
Q  186 tgtaagttttctcc 199  Q
     |||| ||||||||    
T  44539632 cgtaaattttctcc 44539645  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 27339563 - 27339463
Alignment:
Q  87 gtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatgt 186  Q
    ||||||| |||||||| |||||||||| ||||||||||||||||||||||        |||||||  |||||||||||||||  ||||||| |||| |||    
T  27339563 gtaaaatggggttaacagagacgattagtgacatgaattagtaatccacg--------tataattggctaacagtaagaacaattcataaggaactgtgt 27339472  T
Q  187 gtaagtttt 195  Q
    |||||||||    
T  27339471 gtaagtttt 27339463  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 25047963 - 25048056
Alignment:
Q  106 gacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatgtgtaagttttctcc 199  Q
    |||||||| ||||||  |||||||||||| ||||||||||||||||  |||||| ||||||||  ||||||| || | ||||||| ||||||||    
T  25047963 gacgattagtgacatacattagtaatccatgtgttattttataattggctaacaataagaacaattcataaggaattgtgtgtaaattttctcc 25048056  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 2222113 - 2222037
Alignment:
Q  123 attagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatgtgtaagttttctcc 199  Q
    ||||||||| |||||||||||||||||||  |||||| |||||| || ||||||| || | ||||||||||||||||    
T  2222113 attagtaattcacgtgttattttataattgcctaacaataagaatagttcataaggaattgtgtgtaagttttctcc 2222037  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 2221954 - 2221912
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagtttt 315  Q
    |||||||| |||||||||||| |||||||||||||||||||||    
T  2221954 aaagaaaagttcaacccaaaagtgtgctgaaaggggtagtttt 2221912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 35193642 - 35193695
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    |||||||||| |||||||||| |||||||||| ||||||||||||||||| ||||    
T  35193642 aaagaaaattccaacccaaaattgtgctgaaa-gggtagttttctttatatatag 35193695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 44539722 - 44539776
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    |||||||| |||||||||||| |||||||||| || |||||||||||||| ||||    
T  44539722 aaagaaaagttcaacccaaaagtgtgctgaaatggatagttttctttatatatag 44539776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 331
Target Start/End: Original strand, 44973133 - 44973191
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatagatat 331  Q
    |||||||| | ||||| |||| |||||||||||||||||||||||||||| ||| ||||    
T  44973133 aaagaaaagtccaacctaaaagtgtgctgaaaggggtagttttctttatatatatatat 44973191  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 7061485 - 7061430
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    ||||||||| |||||||||||| | || ||||| ||||||||||||||||| ||||    
T  7061485 aaaagaaaagttcaacccaaaagtctgatgaaaagggtagttttctttatatatag 7061430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 7061751 - 7061697
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    ||||||||| |||||||||||| |||| ||||| ||||||||||||||||| ||||    
T  7061751 aaaagaaaagttcaacccaaaagtgtgttgaaa-gggtagttttctttataaatag 7061697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35193331 - 35193365
Alignment:
Q  1 gatgtacaacataaaagcggctgataaaaaagtaa 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  35193331 gatgtacaacataaaatcggctgataaaaaagtaa 35193365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 629423 - 629370
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    ||||||||| |||||||||||||  ||||||||||  |||||||||||||| ||||    
T  629423 aaaagaaaaattcaacccaaaaa--tgctgaaaggaatagttttctttatatatag 629370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 195
Target Start/End: Complemental strand, 56535 - 56426
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| |||||||||||||||| ||| ||||||| |||| ||||||||||||||||||||||||  | |||||||| ||||| ||||||| |||| ||    
T  56535 ggtaaaagagggttaacggagacgtttagtgacatggattaataatccacgtgttattttataattggcgaacagtaaaaacagttcataaggaactgtg 56436  T
Q  186 tgtaagtttt 195  Q
    ||||||||||    
T  56435 tgtaagtttt 56426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 3497 - 3610
Alignment:
Q  86 ggtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatg 185  Q
    ||||||| |||||||||   |||||||| ||| ||| |||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| || | ||    
T  3497 ggtaaaagagggttaacatggacgattagtgatatggattagtaatccacgtgttattttataattagctaacggtaagaacagttcataaggaaatgtg 3596  T
Q  186 tgtaagttttctcc 199  Q
    ||||||||||||||    
T  3597 tgtaagttttctcc 3610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 24432302 - 24432212
Alignment:
Q  87 gtaaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataag 177  Q
    |||||| ||||||||||| |||||||| ||||||||||||||| ||||| |||||||||||||||  |||||||||||||||| |||||||    
T  24432302 gtaaaagagggttaacggggacgattagtgacatgaattagtattccacatgttattttataattggctaacagtaagaacagttcataag 24432212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 107 - 194
Target Start/End: Original strand, 5592720 - 5592807
Alignment:
Q  107 acgattattgacatgaattagtaatccacgtgttattttataattaactaacagtaagaacagctcataagtaactatgtgtaagttt 194  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||| |||  | |||||||||    
T  5592720 acgattagtgacatggattagtaatccacgtgttattttataattgactaacagtaagaatagttcataaggaaccgtatgtaagttt 5592807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 32889194 - 32889139
Alignment:
Q  272 aaaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    ||||||||| |||||||||||| ||||||||||||| |||||||||||||| ||||    
T  32889194 aaaagaaaagttcaacccaaaagtgtgctgaaagggatagttttctttatatatag 32889139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 26527947 - 26527999
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    |||||||| | |||||||||||||  |||||||||||||||||||||||||||||    
T  26527947 aaagaaaaatccaacccaaaaatg--ctgaaaggggtagttttctttatacatag 26527999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 26528092 - 26528045
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttat 321  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||||    
T  26528092 aaagaaaagttcaacccaaaaatgtgttgaaa-gggtagttttctttat 26528045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 32889074 - 32889026
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttat 321  Q
    |||||||| ||||||| |||| ||||||||||||| |||||||||||||    
T  32889074 aaagaaaagttcaacctaaaagtgtgctgaaagggatagttttctttat 32889026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 17415 - 17469
Alignment:
Q  273 aaagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttatacatag 327  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||    
T  17415 aaagaaaatttcaacccaaaagtgtgttgaaaggggtagttttctttatatatag 17469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 17240 - 17303
Alignment:
Q  88 taaaatagggttaacggagacgattattgacatgaattagtaatccacgtgttattttataatt 151  Q
    ||||| ||||||||||||||| |||| ||||||| |||||||||||| || |||||||||||||    
T  17240 taaaagagggttaacggagacaattagtgacatggattagtaatccatgtattattttataatt 17303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 47466 - 47511
Alignment:
Q  274 aagaaaatttcaacccaaaaatgtgctgaaaggggtagttttctttat 321  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||||||    
T  47466 aagaaaaattcaacccaaaa--gtgctgaaaggggtagttttctttat 47511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0990 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0990
Description:

Target: scaffold0990; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 1116 - 1083
Alignment:
Q  2 atgtacaacataaaagcggctgataaaaaagtaa 35  Q
    ||||||||||||||||||||| ||||||||||||    
T  1116 atgtacaacataaaagcggctaataaaaaagtaa 1083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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