View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20511_low_4 (Length: 349)

Name: NF20511_low_4
Description: NF20511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20511_low_4
NF20511_low_4
[»] scaffold0140 (1 HSPs)
scaffold0140 (13-290)||(26002-26281)


Alignment Details
Target: scaffold0140 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 26281 - 26002
Alignment:
Q  13 aaaataatagaacctatagcatatattaagattactcatgtgaaaatgtgaaatctcttggcttgttaaaagcgaaatacaa--atcttattttcgatca 110  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||| |    
T  26281 aaaataatagaacctataacatatattaagattactaatgtgaaaatgtgaaatcttttggcttgttaaaagcgaaatacaacgatcttattttcgatta 26182  T
Q  111 tcacatatggtggggaaatccttctaatttcttgtaatgattatctttactttctttttgatgtaccatgtccatacctgtttctgatgtaacattactt 210  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  26181 tcacatgtggtggg-aaatccttctaatttcttgtaatgattatctttactttctttttggtgtaccatgtccatacttgtttctgatgtaacattactt 26083  T
Q  211 ttttctttacttttccctaacactccgtcttgtgcctagtaaataaagaagattgatcaat-atacttttcattttaactt 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  26082 ttttctttacttttccctaacactccgtcttgtgcctagtaaataaagaagattgatcaataatacatttcattttaactt 26002  T

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