View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20512_high_2 (Length: 352)
Name: NF20512_high_2
Description: NF20512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20512_high_2 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 12 - 352
Target Start/End: Complemental strand, 43255951 - 43255611
Alignment:
| Q |
12 |
cacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcatacc |
111 |
Q |
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| T |
43255951 |
cacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcatacc |
43255852 |
T |
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| Q |
112 |
ctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaagattagctatgtt |
211 |
Q |
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| T |
43255851 |
ctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaaggttagcaatgtt |
43255752 |
T |
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| Q |
212 |
ggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttg |
311 |
Q |
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| T |
43255751 |
ggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttg |
43255652 |
T |
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| Q |
312 |
accagtctcaagttccactaaatgaatgtattatatatatg |
352 |
Q |
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| T |
43255651 |
accagtctcaagttccactaaatgaatgtattatatatatg |
43255611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 12 - 352
Target Start/End: Complemental strand, 43259217 - 43258877
Alignment:
| Q |
12 |
cacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcatacc |
111 |
Q |
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| T |
43259217 |
cacagaagattccaagattggtacaatcctggctccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcatacc |
43259118 |
T |
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| Q |
112 |
ctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaagattagctatgtt |
211 |
Q |
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| T |
43259117 |
ctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaggaattaaagctgaaggaagttaagaatggaaggttagcaatgtt |
43259018 |
T |
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| Q |
212 |
ggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttg |
311 |
Q |
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| T |
43259017 |
ggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttg |
43258918 |
T |
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| Q |
312 |
accagtctcaagttccactaaatgaatgtattatatatatg |
352 |
Q |
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| T |
43258917 |
accagtctcaagttccactaaatgaatgtattatatatatg |
43258877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 48 - 351
Target Start/End: Complemental strand, 43247918 - 43247615
Alignment:
| Q |
48 |
atgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcataccctggtggacctatatttaaccctcttggttttggta |
147 |
Q |
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| T |
43247918 |
atgggaaaacaatactttttaggacttgagaaaggtcttggcggttccggtgaaccagcataccctggtggacctatatttaaccctcttggttttggta |
43247819 |
T |
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| Q |
148 |
aagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaagattagctatgttggcaatattgggttactttattcaagctcttgttac |
247 |
Q |
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| T |
43247818 |
aagatgagaaatcattgaaggatttaaagctgaaggaagttaagaatggaaggttagctatgttggcaatattgggttactttgttcaagctctagttac |
43247719 |
T |
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| Q |
248 |
aggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatat |
347 |
Q |
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| T |
43247718 |
aagagttggaccataccaaaacttcttaaatcatttggctgacccttcaaacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatat |
43247619 |
T |
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| Q |
348 |
atat |
351 |
Q |
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|||| |
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| T |
43247618 |
atat |
43247615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 215 - 310
Target Start/End: Complemental strand, 43234059 - 43233964
Alignment:
| Q |
215 |
aatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatctt |
310 |
Q |
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| T |
43234059 |
aatactgggtgactttgttcaatctcttgttacaggagttggaccataccaaaacctcttggatcatttggctgaccctttcaacaacaacatctt |
43233964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 297 - 351
Target Start/End: Complemental strand, 43254144 - 43254090
Alignment:
| Q |
297 |
aacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatatatat |
351 |
Q |
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| T |
43254144 |
aacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatatatat |
43254090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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