View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20512_low_1 (Length: 289)

Name: NF20512_low_1
Description: NF20512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20512_low_1
NF20512_low_1
[»] chr4 (3 HSPs)
chr4 (16-272)||(46990692-46990946)
chr4 (244-272)||(13634392-13634420)
chr4 (244-272)||(32952545-32952573)
[»] chr7 (1 HSPs)
chr7 (245-273)||(8001351-8001379)
[»] chr6 (2 HSPs)
chr6 (244-272)||(606462-606490)
chr6 (245-273)||(7515008-7515036)
[»] chr3 (2 HSPs)
chr3 (244-272)||(21533613-21533641)
chr3 (244-272)||(48650538-48650566)
[»] chr1 (1 HSPs)
chr1 (244-272)||(41081491-41081519)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 46990692 - 46990946
Alignment:
Q  16 aatatagtgaggaaaatcttatattaaatgttgagaggttaaattccggatttaaatttgcgctctgagacatcaaatgttcttacatctannnnnnnnn 115  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  46990692 aatatagtgaggaaaatcttatattaaatgtggagaggttaaattccggatttaaatttgcgctctgagacatcaaatgttcttacatctattttttttt 46990791  T
Q  116 nnngaaagaaaatgttcttacatctattatttagtaagatatgctcacaagagagtataacaatattatttattccacacggaaacaaataaaaggaata 215  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46990792 tt-gaaagaaaatgttcttacatctattatttagtaagatatgctcacaagagagtataacaatattatttattccacacggaaacaaataaaaggaata 46990890  T
Q  216 tattattttattttatttnnnnnnnnnntgatattcattcattcaaatcgatagagt 272  Q
    ||||||||||||||||||          |||||||||||||||||||||||||||||    
T  46990891 tattattttattttattt-aaaaaaaaatgatattcattcattcaaatcgatagagt 46990946  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 13634420 - 13634392
Alignment:
Q  244 tgatattcattcattcaaatcgatagagt 272  Q
    |||||||||||||||||||||||||||||    
T  13634420 tgatattcattcattcaaatcgatagagt 13634392  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 32952545 - 32952573
Alignment:
Q  244 tgatattcattcattcaaatcgatagagt 272  Q
    |||||||||||||||||||||||||||||    
T  32952545 tgatattcattcattcaaatcgatagagt 32952573  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 273
Target Start/End: Original strand, 8001351 - 8001379
Alignment:
Q  245 gatattcattcattcaaatcgatagagtg 273  Q
    |||||||||||||||||||||||||||||    
T  8001351 gatattcattcattcaaatcgatagagtg 8001379  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 606490 - 606462
Alignment:
Q  244 tgatattcattcattcaaatcgatagagt 272  Q
    |||||||||||||||||||||||||||||    
T  606490 tgatattcattcattcaaatcgatagagt 606462  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 273
Target Start/End: Original strand, 7515008 - 7515036
Alignment:
Q  245 gatattcattcattcaaatcgatagagtg 273  Q
    |||||||||||||||||||||||||||||    
T  7515008 gatattcattcattcaaatcgatagagtg 7515036  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 21533613 - 21533641
Alignment:
Q  244 tgatattcattcattcaaatcgatagagt 272  Q
    |||||||||||||||||||||||||||||    
T  21533613 tgatattcattcattcaaatcgatagagt 21533641  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 48650538 - 48650566
Alignment:
Q  244 tgatattcattcattcaaatcgatagagt 272  Q
    |||||||||||||||||||||||||||||    
T  48650538 tgatattcattcattcaaatcgatagagt 48650566  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 41081491 - 41081519
Alignment:
Q  244 tgatattcattcattcaaatcgatagagt 272  Q
    |||||||||||||||||||||||||||||    
T  41081491 tgatattcattcattcaaatcgatagagt 41081519  T

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