View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20513_high_1 (Length: 675)

Name: NF20513_high_1
Description: NF20513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20513_high_1
NF20513_high_1
[»] chr4 (1 HSPs)
chr4 (18-675)||(54262987-54263645)


Alignment Details
Target: chr4 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 18 - 675
Target Start/End: Complemental strand, 54263645 - 54262987
Alignment:
Q  18 aatcctgtatgtttaatccttaaccagttccacaaaagcaaattcaccttttctgcaatcgcgtccaacgacacatttttatcctgaannnnnnnnnn-- 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  54263645 aatcctgtatgtttaatccttaaccagttccacaaaagcaaattcaccttttctgcaatcgcgtccaacgacacatttttatcctgaatttttttttttt 54263546  T
Q  116 gtgcgtttctagacttccaaatactcctccactagcaggcaaaccaaatttgttcttaaacccaactccgttccttttcctccaatacttactccagaga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54263545 gtgcgtttctagacttccaaatactcctccactagcaggcaaaccaaatttgttcttaaacccaactccgttccttttcctccaatacttactccagaga 54263446  T
Q  216 aataattgagatgagaattgcaattattatgatacaccacactcactctagccatttagccatatccatccacactttagnnnnnnnnnngcacattcaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||    
T  54263445 aataattgagatgagaattgcaattattatgatacaccacactcactctagccatttagccatatccatccacactttagaaataaacatag-cattcaa 54263347  T
Q  316 aaaataaatgggatgttgactctatcaccacagccacctacacaatttagctaatctccgcttaggattcctcttctagataaattatctttgattggaa 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  54263346 aaaataaatgggatgttgactctatcaccacagccacctacacaatttagctaatctccgcttaggattactcttctagataaattatctttgattggaa 54263247  T
Q  416 tacggttttgaaatacttggcacacaaacaccacaactttcaacagaatgaatttatgctacgccttattgttgagtggttgatccaggattgctatctt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54263246 tacggttttgaaatacttggcacacaaacaccacaactttcaacagaatgaatttatgctacgccttattgttgagtggttgatccaggattgctatctt 54263147  T
Q  516 ccattaagacattgtaagccgacttaacagaatagaaatttgacgagtcctccacccaaactatacaatctttttctaccctccatgatgataacctttt 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54263146 ccattaagacattgtaagccgacttaacagaatagaaatttgacgagtcctccacccaaactatacaatctttttctaccctccatgatgataacctttt 54263047  T
Q  616 ctaattcctcgatcatgcgatgaagcaattccgcttaccgcttgaataactctcttctcc 675  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  54263046 ctaattcctcaatcatgcgatgaagcaattccgcttaccgctagaataactctcttctcc 54262987  T

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