View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20513_low_3 (Length: 525)
Name: NF20513_low_3
Description: NF20513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20513_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 178 - 507
Target Start/End: Original strand, 19796945 - 19797269
Alignment:
| Q |
178 |
aactaggtctcaaatttttggaatcctcttttcaacaaattaaatttcaatttgaatggagttgtaaagatcatcacaaccatcccttctcaccatttta |
277 |
Q |
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| T |
19796945 |
aactaggtctcaaattttttgaatcctcttttcaa-----gaaatttcaaattgaatggagttgcaaaaatcatcacaaccatcccttctcaccatttta |
19797039 |
T |
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| Q |
278 |
taatttgacttgtagatgactatggaaaatgcaaatacaaatatctcagtttggtgggacgttggaaattgtcaaattccaaaaaactttcacagtattg |
377 |
Q |
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| T |
19797040 |
taatttgacttgtagatgactatggaaaatgcaaatacaaatatctcagtttggtgggacgttggaaattgccaaattccaacaaactttgacagtattg |
19797139 |
T |
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| Q |
378 |
actgcattgttaataatattcgcttatctctcttaaaagccaaccttcgtggcaaactatccatttctgcttatggaaacacaaatctcatcgctagtgg |
477 |
Q |
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| T |
19797140 |
actgcattgttaataatattcgattagctctcttaaaagccaaccttcgtggcaaactatccatttctgcttatggaaacacaaatctcatcgctagtgg |
19797239 |
T |
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| Q |
478 |
gcttcaacatgcactctccaccgcaggcat |
507 |
Q |
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| T |
19797240 |
gcttcaacatgcactctccaccgcaggcat |
19797269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 19796847 - 19796903
Alignment:
| Q |
23 |
ttctgggaaaccccttaacgctattcaacaggtaaccttcaaaatctaaaccctatg |
79 |
Q |
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| T |
19796847 |
ttcttggaaactccttaacgcaattcagcaggtaaccttcaaaatctaaaccctatg |
19796903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 475
Target Start/End: Original strand, 19796309 - 19796483
Alignment:
| Q |
304 |
aaatgcaaatacaaatatctcagtttggtgggacgttggaaattgtcaaattccaa---aaaactttcacagtattgactgcattgttaataatattcgc |
400 |
Q |
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| T |
19796309 |
aaatgcaaatgcaaatatttcagtttggtgggacattgaaacctgtcaatttccaaccaataattttgatgacatttactacattgctaagaatattcac |
19796408 |
T |
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| Q |
401 |
ttatctctcttaaaagccaaccttcgtggcaaactatccatttctgcttatggaaacacaaatctcatcgctagt |
475 |
Q |
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| T |
19796409 |
ttagctctctccaatgtcaaccttcatggcagactaaccatttctgcttatggaaactccgatctcatccctagt |
19796483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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