View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20513_low_4 (Length: 513)
Name: NF20513_low_4
Description: NF20513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20513_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 18 - 495
Target Start/End: Complemental strand, 54263146 - 54262668
Alignment:
| Q |
18 |
ccattaagacattgtaagccgacttaacagaatagaaatttgacgagtcctccacccaaactatacaatctttttctaccctccatgatgataacctttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54263146 |
ccattaagacattgtaagccgacttaacagaatagaaatttgacgagtcctccacccaaactatacaatctttttctaccctccatgatgataacctttt |
54263047 |
T |
|
| Q |
118 |
ctaattcctcgatcatgcgatgaagcaattccgcttaccgcttgaataactctcttctccacctaaaatcccacacccggttcccaccaatttccctctt |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54263046 |
ctaattcctcaatcatgcgatgaagcaattccgcttaccgctagaataactctcttctccacctaaaatcccacacccggttcccaccaatttccctctt |
54262947 |
T |
|
| Q |
218 |
caacaccatcaccttggcctctttgttcaaagataaggaaaatagttgatcagttctcatttttaatgacctcccct-cccacccaatggtcactccaaa |
316 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54262946 |
caacaccatcaccttagcctctttgttcaaagataaggaaaatagttgatcagttctcatttttaatgacctcccctccccacccaatggtcactccaaa |
54262847 |
T |
|
| Q |
317 |
ataaagtatcctctccgttccgcattatttttctaacgcaaccctaaaaccaattatgattgttacctatcccccttctttccacaattttttacacccc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54262846 |
ataaagtatcctctccgttccgcattatttttctaacgcaaccctaaaaccaattatgattgttacctatcccccttctttccacaattttttacacccc |
54262747 |
T |
|
| Q |
417 |
acccactcacccccatttctttttccttacaaacttatttgtcagcatctacacacgatcaaaagtatttagattctaa |
495 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54262746 |
actcactcacccccatttctttttccttacaaacttatttgtcagcatctacacacgatcaaaagtatttagattctaa |
54262668 |
T |
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